Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01239 ATGAAGTGGGAAATGGAAATTCTTTCTCCtaatcctaatcataatcttaatcctaatcttaatcttaatcATCATGCACCATTTGTTCAAAATTCCAACAACAACACTACAAATTGGTTTTTGGAAGATGATAGTTATAGCAGGAACAGCACAAAATGGACACAAGCAGAGAACAAATTGTTTGAAAATGCTCTTGCAGTTTACGATAAGGACACGCCGGATCGATGGCACAAAGTGGCTGAAATGATACCTGGAAAAACTGTTGTTGATGTGTTGAATCAGTACAAGGAATTGGAAGTTGATGTTTGTAACATAGAAGCTGGTTTGATTCCAATTCCTGGTTACACTACTACAACCAATTCACCTTTCACTTTAGATTGGGTGAATAGTTCTGGTTATGATGGTTTTAGAGGAATCACTTCAAAGAGAGGTTCTTCAGGTAGATCTCCTGATCAAGAAAGGAAGAAAGGTGTTCCATGGACTGAAGAAGAACACAAGCTGTTTCTTTTGGGTCTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATTTCAAGGAATTTTGTGATAACTAGGACACCAACACAAGTAGCTAGTCATGCTCAGAAATATTTCATAAGACAACTCTCAGGTGGCAAAGACAAGAGAAGAGCTAGTATACATGACATAACAACAGTTAATCTCACAGAAACTACTAGAACAACAATTTCTTCAGAAGAAATCAAGAGATCCACTTCACCACATCATCATTCAATGAATATGAACAAGTATTCAAATGCTAACACAATATCTGAGGTGCATTTTCATTGGaataataataataataatCAGCCAGCTATGACAGGATTCAATAATCATGCACATGAACAAGTTTTCATGTCTCCTTATAATGGAGTTAATAACTCTTACGAGTTTAAAATGCAGGGTCAAAATATGCATAGAAATCCTCTTCATGAGAATTCATACTTAGTACCTCAAACACAAAACATGGTTTTCCAAATGCAATCTTCTCAACAACACTATTCACATGCATGA 1032 0.3459 MKWEMEILSPNPNHNLNPNLNLNHHAPFVQNSNNNTTNWFLEDDSYSRNSTKWTQAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVVDVLNQYKELEVDVCNIEAGLIPIPGYTTTTNSPFTLDWVNSSGYDGFRGITSKRGSSGRSPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTTISSEEIKRSTSPHHHSMNMNKYSNANTISEVHFHWNNNNNNQPAMTGFNNHAHEQVFMSPYNGVNNSYEFKMQGQNMHRNPLHENSYLVPQTQNMVFQMQSSQQHYSHA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01239 343 ProSiteProfiles Myb-like domain profile. 45 99 IPR001005 -
Car05g01239 343 SUPERFAMILY Homeodomain-like 46 99 IPR009057 -
Car05g01239 343 ProSiteProfiles Myb-like domain profile. 152 204 IPR001005 -
Car05g01239 343 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 155 207 IPR006447 GO:0003677
Car05g01239 343 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 34 311 IPR043363 -
Car05g01239 343 SUPERFAMILY Homeodomain-like 154 207 IPR009057 -
Car05g01239 343 SMART sant 49 101 IPR001005 -
Car05g01239 343 SMART sant 156 206 IPR001005 -
Car05g01239 343 CDD SANT 52 98 IPR001005 -
Car05g01239 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 208 IPR017930 -
Car05g01239 343 ProSiteProfiles SANT domain profile. 160 208 IPR017884 -
Car05g01239 343 Gene3D - 44 112 - -
Car05g01239 343 PANTHER MYB TRANSCRIPTION FACTOR MYB51 34 311 - -
Car05g01239 343 Pfam Myb-like DNA-binding domain 52 96 IPR001005 -
Car05g01239 343 Pfam Myb-like DNA-binding domain 159 204 IPR001005 -
Car05g01239 343 MobiDBLite consensus disorder prediction 139 158 - -
Car05g01239 343 CDD SANT 159 204 IPR001005 -
Car05g01239 343 MobiDBLite consensus disorder prediction 233 252 - -
Car05g01239 343 Gene3D - 158 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01239 Car-Chr5 55631520 55634281 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g01239 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01239 - - cam:101514273 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01239 05 55631520 55634281 Car05g01239 05 55631520 55634281 ECH
Car05g01239 05 55631520 55634281 Car02g01672 02 45681382 45683814 ECH
Car05g01239 05 55631520 55634281 Car02g01313 02 39144374 39147570 ECH
Car03g01248 03 56775876 56778604 Car05g01239 05 55631520 55634281 ECH
Car06g02483 06 28012562 28014539 Car05g01239 05 55631520 55634281 ECH