Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01227 ATGTCGTATTCTCGGAGATCAAGGTATTCTCCCTCTCCTTCCCTCTCTCCATACAGGCGATACAGTAGGTCTGTGTCCAGGTCTCTTTCAAGGTCGAGATCCAGAAGCCGATCAAGGAGCGCATCACGAGATGCAGAAAATCCGGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCTGCTGAAGGAAAAGTGATAGATGTCCATCTGGTTGTTGATCCATGGACAAGGGCATCCCGTGGTTTTGGATTTGTGACAATGGAGACTTTAGAAGAAGCTGATCGATGTGTTAAGTATCTGGATCGCTCTGTACTTGAAGGCCGTGTTATCATGGTGGAGAAGGCTAGAAGACGACGCGGTCGAACCCCAACACCTGGGAAATATCTAGGTCTCAGGACTATTCGCTCATCTCGTCGCTCTCCAAGCTACTCTCCTCGTCGCTCTCCTAGCTATTCTTCTTATAGAAGAAGCTACAGTCGTTCACCTTACTGTTCAGATCGTAGTAGGAGTCGGTCTTTCTCGCCTGACTACAGACGAAGGAGGTCCTACTCTCCTGACTACAGGCGAAGGAGGGCATACTCACCATACTACAGCCGACGCAGGTCTCACTATCATTATGACCGGCACAGATCATATTCTCGTTCTCGCTCTCCGTACAGCAGGTCTCCTGTCAGTGTGCGTGACAGATCATACTCTCCCTATGATTCTAGATATCACTCACCTGATGATAGCTACTACAGAAGGTACCGTAACAGGTCGGTTTCTCGAAGTGTGTCACCCAGGCCAAGGAGGTCAAGGAGGAGCTACTCACGGAGCGTCTCTCCCATTCGAAGGAGCTACTCACGGAGCGTCTCTCCCATTCGAAGGAGTTACTCACGAAGTGTCTCCCCCAGGCCAAGGAGAAGATCAGGAAGGAGTCATTCAAGAAGCTCTAGGAGTGGTTATTCGAAACCGAAGCATTCTCGATCAAGAACCACAAGTGTGAGTGCGAGTTCAAGATCGTTTTCAAGGTCCAACACTCCAGGATCTACCTCTCCTTCAAATTGA 1080 0.4907 MSYSRRSRYSPSPSLSPYRRYSRSVSRSLSRSRSRSRSRSASRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRASRGFGFVTMETLEEADRCVKYLDRSVLEGRVIMVEKARRRRGRTPTPGKYLGLRTIRSSRRSPSYSPRRSPSYSSYRRSYSRSPYCSDRSRSRSFSPDYRRRRSYSPDYRRRRAYSPYYSRRRSHYHYDRHRSYSRSRSPYSRSPVSVRDRSYSPYDSRYHSPDDSYYRRYRNRSVSRSVSPRPRRSRRSYSRSVSPIRRSYSRSVSPIRRSYSRSVSPRPRRRSGRSHSRSSRSGYSKPKHSRSRTTSVSASSRSFSRSNTPGSTSPSN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01227 359 MobiDBLite consensus disorder prediction 205 221 - -
Car05g01227 359 PANTHER TRANSFORMER-2-RELATED 10 270 - -
Car05g01227 359 MobiDBLite consensus disorder prediction 127 359 - -
Car05g01227 359 MobiDBLite consensus disorder prediction 146 181 - -
Car05g01227 359 MobiDBLite consensus disorder prediction 305 330 - -
Car05g01227 359 SMART rrm1_1 51 124 IPR000504 GO:0003723
Car05g01227 359 Gene3D - 4 134 IPR012677 -
Car05g01227 359 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 10 270 - -
Car05g01227 359 MobiDBLite consensus disorder prediction 331 359 - -
Car05g01227 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Car05g01227 359 SUPERFAMILY RNA-binding domain, RBD 41 153 IPR035979 GO:0003676
Car05g01227 359 MobiDBLite consensus disorder prediction 268 282 - -
Car05g01227 359 MobiDBLite consensus disorder prediction 1 53 - -
Car05g01227 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Car05g01227 359 MobiDBLite consensus disorder prediction 243 261 - -
Car05g01227 359 MobiDBLite consensus disorder prediction 283 303 - -
Car05g01227 359 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01227 Car-Chr5 55501193 55504303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01227 51 132 Eukaryotic Initiation Factors Gene Family AT2G36660 34.146 6.42e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01227 - - gmx:100805126 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01227 05 55501193 55504303 Car05g01227 05 55501193 55504303 ECH