Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01211 ATGCAGTCGAAGTCTGAAACTGCTAATCAACTGAGTTCGGATCCCCATTCATTTCAGCCTGGTGGTGTTTATTCTGAACCTTGGTGGCGTGGTGTTGGATACAATCCTGTGGCTCAAACAATGTCTGGGGCCAATTCATCCTCTCTTGATTGCCCTAATGGTGATTCAGAATCCAACGAGGAAGGCCAATCTTTGTCCAATAGTGGGATGAATGAGGAAGATGACGATGCTGCTAAGGATTCACAGCCTGCTGCTCCTAATCAACCAGGAAATTATGGGCAAGAACAACAAGGAATGCAGCACACTGCATCATCTGCACCTTCCGTGCGCGAAGAAGGTCTCACACAAACTCCTCAGCTGGAACTTGTTGGTCACTCAATTGCATGTGCTACAAATCCGTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCCGTTGGGATATCCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTCGAGATGGCTCAAGAACCTGTTTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAACTTGAAAGGAAGCTCATAAAATCTCGAAAGCCATATCTTCATGAATCTAGACATCAGCATGCTATGAGAAGGGCAAGAGGTACTGGAGGTCGATTTGCAAAGAAAACTGACGCCGAGGCCTCAAACAACTCAGGAAAGGATAAGGATAATGGCTCTGGTCCCGTCATGTCTTCACAGTCAATAAGTTCGTCTGGTTCAGAACCTTTTCCTTCGGACTCTGCTGAAACCTGGAACTCTCCCAACGTGCGACAAAATGCAAGAGCATCGAATGAAAACGGAGGCAGCGGCTCCTACCATAATAATAACAACGGTATGCAATCTTCAAGGTATCATGGTGAAAGAGTGGATGAAGGGGACTGTTCAGGGCAGTTACGTGGAAGCATCTCCTCGAAGGAGGCATCACAGAGGCGTCTTGCTATTCAGTAG 1014 0.4714 MQSKSETANQLSSDPHSFQPGGVYSEPWWRGVGYNPVAQTMSGANSSSLDCPNGDSESNEEGQSLSNSGMNEEDDDAAKDSQPAAPNQPGNYGQEQQGMQHTASSAPSVREEGLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQPLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDAEASNNSGKDKDNGSGPVMSSQSISSSGSEPFPSDSAETWNSPNVRQNARASNENGGSGSYHNNNNGMQSSRYHGERVDEGDCSGQLRGSISSKEASQRRLAIQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01211 337 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Car05g01211 337 MobiDBLite consensus disorder prediction 84 115 - -
Car05g01211 337 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Car05g01211 337 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Car05g01211 337 MobiDBLite consensus disorder prediction 206 225 - -
Car05g01211 337 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 29 327 - -
Car05g01211 337 MobiDBLite consensus disorder prediction 204 337 - -
Car05g01211 337 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Car05g01211 337 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 29 327 IPR001289 GO:0003700|GO:0006355
Car05g01211 337 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Car05g01211 337 Gene3D - 171 233 - -
Car05g01211 337 MobiDBLite consensus disorder prediction 1 19 - -
Car05g01211 337 MobiDBLite consensus disorder prediction 1 115 - -
Car05g01211 337 MobiDBLite consensus disorder prediction 241 305 - -
Car05g01211 337 MobiDBLite consensus disorder prediction 38 71 - -
Car05g01211 337 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Car05g01211 337 MobiDBLite consensus disorder prediction 319 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01211 Car-Chr5 55260054 55263999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01211 1 275 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.737 1.73e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Car05g01211 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01211 K08064 - gmx:100808378 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01211 05 55260054 55263999 Car05g01211 05 55260054 55263999 ECH