Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01202 ATGGGTCGTATTCCATGCTGTGAGAAGGACAACGTGAAGAGAGGTCAGTGGACACCTGAGGAAGATAACAAACTCTCCTCTTACATTGCTCAACATGGCACTCGCAACTGGCGCCTCATTCCCAAGAATGCTGGCCTTCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAATTACCTTCGTCCTGATCTTAAACATGGCCAATTCTCAGATGCAGAAGAGCAAACTATTGTTAAACTTCATTCAGTTTTCGGTAACAGATGGTCACTGATAGCAGCCCAGCTGCCGGGACGCACGGACAATGATGTCAAAAACCACTGGAACACCAAGCTGAAAAAGAAACTGTCAGGCATGGGTATAGACCCTGTCACCCACAAGCCATTCTCTCATTTAATGGCTGAAATTGCTACAACATTGGCACCCCCACAGGCAGCTCACCTAGCTGAAGCAGCCCTTGGCTGCTTCAAGGACGAAGTGCTCCACCTTCTCACCAGGAAGCCAATTAACTTCCAGGGCCAACATTCCAACGTAGGATTGGGAAATAACATCACAGATTACTTTAACTGTAAGCCAGAAGAAAAGGACGACAATGTTGAGAAGATTAAGCTTGACCTATCAAAGGCCATACAACAAGAACATGAAATGATGCCCTCAAATAAACCTTGGGACTCCACTGCTGCTACATCTGCAAGTTTTGCAATGCCATACAATGTTTTCCCTACCATGTCTGGGTTTCAATTCAGTCCATCATGTTTCGGCAATAAAGGGGATGCATCACCATGGAGCCAAAGCTTATGTACCGGAAGCACATGCACAGCCATGGACCAGCAAAGCCAGTTTCATGAAAAATTCGAAGAGGAAAATGGGGATGATTCTGAGGCTACAAAAGAACTTAGAAATCTATCCAATATATTCAACTCAGACTGTGTCGTGTGGGATTTACCAGCAGATGATTTAATCAATCCCATGGTATAA 978 0.4519 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDAEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTRKPINFQGQHSNVGLGNNITDYFNCKPEEKDDNVEKIKLDLSKAIQQEHEMMPSNKPWDSTAATSASFAMPYNVFPTMSGFQFSPSCFGNKGDASPWSQSLCTGSTCTAMDQQSQFHEKFEEENGDDSEATKELRNLSNIFNSDCVVWDLPADDLINPMV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01202 325 Gene3D - 69 128 - -
Car05g01202 325 Gene3D - 14 66 - -
Car05g01202 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Car05g01202 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Car05g01202 325 PANTHER TRANSCRIPTION FACTOR MYB80 1 325 - -
Car05g01202 325 CDD SANT 70 112 IPR001005 -
Car05g01202 325 CDD SANT 17 61 IPR001005 -
Car05g01202 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car05g01202 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car05g01202 325 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Car05g01202 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car05g01202 325 PANTHER F14D16.11-RELATED 1 325 - -
Car05g01202 325 SMART sant 66 114 IPR001005 -
Car05g01202 325 SMART sant 13 63 IPR001005 -
Car05g01202 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01202 Car-Chr5 55006160 55007329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01202 1 325 MYB Transcription Factor Family AT5G56110 57.402 2.91e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g01202 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01202 K09422 - gmx:100800764 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01202 05 55006160 55007329 Car05g01202 05 55006160 55007329 ECH