Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01198 ATGGCTAGGGGAAATCCAACCCTCCCTATACGTTTCTTCAAGATTATTCTTCAAACTAATCTTCAAAAGATTAAAATACCCAATAATTTTACAAGGAGTTATGGATTTGGTCTATCAAATCCAGTGTTTATCATGCTTCCTGATGGAACTAAATGGAAAGTGTATTGGAAAAAAATCAATGGTGAGATTTGGTTGGAAAAGGGTTGGAAAAAATTTACTGAAAATTACTCTCTACAACAAGGGTGTTTGGTGGTGTTTGAATATGAAGGAGTTTCTAAGTTTGATGTACTCATACTTGACCAAACTGCAGTAGAAATAGACTATTCTTCATGTCACACTTTTGATGAAAATAAAAATCTTGCTCATAGTGATGATGATTCAATTGAGATTTTGGATGAGTTGCCAAAAAAAAAGACTAGGCAAAGGTCACCATTAGTTTCTCCACGACCACTCAAGAAAGTTAGAGGTGAGACAGAGAAGACTGCAAAAAGAACTTCATCATTGAATTGGCCAAAAGGAGCTAGAGCTCAAGAAATATCTAAAAAATTCATCTCATGCAATCCTTTTTTCACACGTCTCATAAAGACTATTAATATGGTAGAAAACCGGCTGTATGTACCAGATTTAAAAGGGATAATTGAGAACAAGGAGAAGAATGTGATGCTGCAGATTGGTAAAAGATCATGGAATATGAAATTGCTCCGATTTAGGTCTAACAACGGTCGTCGCTTTTCGTCCGGTTGGTCGCTGTTTGCAAGACAAAGTGGACTGCAGCCAGGAGATGTTTGTGTTTTTGAATTGATAAACAAAAATGATTTAGTTTTTAAAGTTCATGTTTTCAAAAGGGACAGTTAA 855 0.3544 MARGNPTLPIRFFKIILQTNLQKIKIPNNFTRSYGFGLSNPVFIMLPDGTKWKVYWKKINGEIWLEKGWKKFTENYSLQQGCLVVFEYEGVSKFDVLILDQTAVEIDYSSCHTFDENKNLAHSDDDSIEILDELPKKKTRQRSPLVSPRPLKKVRGETEKTAKRTSSLNWPKGARAQEISKKFISCNPFFTRLIKTINMVENRLYVPDLKGIIENKEKNVMLQIGKRSWNMKLLRFRSNNGRRFSSGWSLFARQSGLQPGDVCVFELINKNDLVFKVHVFKRDS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01198 284 SUPERFAMILY DNA-binding pseudobarrel domain 11 109 IPR015300 -
Car05g01198 284 Gene3D - 9 103 IPR015300 -
Car05g01198 284 CDD B3_DNA 189 281 IPR003340 GO:0003677
Car05g01198 284 PANTHER B3 DOMAIN-CONTAINING 9 281 - -
Car05g01198 284 CDD B3_DNA 11 100 IPR003340 GO:0003677
Car05g01198 284 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 281 - -
Car05g01198 284 ProSiteProfiles B3 DNA-binding domain profile. 189 283 IPR003340 GO:0003677
Car05g01198 284 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Car05g01198 284 Gene3D - 171 283 IPR015300 -
Car05g01198 284 Pfam B3 DNA binding domain 191 282 IPR003340 GO:0003677
Car05g01198 284 Pfam B3 DNA binding domain 20 98 IPR003340 GO:0003677
Car05g01198 284 SMART B3_2 190 283 IPR003340 GO:0003677
Car05g01198 284 SMART B3_2 12 102 IPR003340 GO:0003677
Car05g01198 284 MobiDBLite consensus disorder prediction 138 167 - -
Car05g01198 284 SUPERFAMILY DNA-binding pseudobarrel domain 186 283 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01198 Car-Chr5 54963328 54965274 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01198 12 281 B3 DNA Binding Superfamily AT3G18990 25.519 9.16e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car05g01198 B3 4.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01198 - - mtr:MTR_3g061330 338.961