Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g01188 | ATGATTGTTCAGCAGCTTCATGACCAGCGAGTTGTGCTTGTTAATCAGGCTTCTTTTTACAACAACTTGACTGATGAAGAGCTAGCGAGGGTACAAGATTACAACTTTGACCATCCTGATGCTTTTGATACCGAGGAATTGCTTCGTGTTATGGACCACTTGAAGCATGGTGAAGCTGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAAAGTGATGCATTAAGAAGGGTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGGCGTGATACCAGCGAGAAGGATCGGGATATTGGTACAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCCGATATAATTATACCTCGTGGAGGAGATAATCATGTGGCAGTGGATTTGATTGTTCAACATATCCGCACAAAGCTTGGTCAGCATGACCTATGTAAAATATATCCAAATTTATATGTCATTCAGTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCTCAGATAACGAAGCATGATTTTGTATTTTATTCTGATCGTTTGATTCGTTTGGTTGTTGAACATGGTTTGGGACATCTTCCATTTACAGAAAAACAAGTTATCACTCCCACTGGTTCTGTATACACTGGTGTGGATTTTTGTAAGAGGTTGTGTGGTGTCTCTGTCATCAGAAGTGGGGAGAGTATGGAGAATGCCTTAAGAGCATGCTGTAAAGGTATTAAGATTGGGAAAATTCTGATCCACAGAGAAGGTGACAACGGCCAACAGCTAATATATGAAAAGCTGCCAAATGATATCTCAGAAAGGCATGTGTTACTGTTGGACCCTATCCTTGGCACAGGTAATTCGGCTGTTCAAGCGATTTCTTTACTTATAAAGAAAGGTGTACCAGAGTCCAACATTATATTTCTTAATCTCATATCTGCTCCTAAAGGTGTTCATGTGGTATGCAAAAGTTTTCCAAGAATTAAAATAGTAACATCTGAGATAGAGATTGGTTTGAATGAAGATTTCCGTGTCATACCGGGCATGGGCGAGTTTGGAGATCGATACTTTGGAACCGATGATGATGAGCAAGTGGTGGTTCCTTCACAGTAA | 1233 | 0.3958 | MIVQQLHDQRVVLVNQASFYNNLTDEELARVQDYNFDHPDAFDTEELLRVMDHLKHGEAVDIPKYDFKSYKSDALRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTSEKDRDIGTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAVDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQITKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISERHVLLLDPILGTGNSAVQAISLLIKKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDEQVVVPSQ | 410 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g01188 | 410 | PANTHER | URIDINE KINASE-LIKE PROTEIN 3 | 1 | 401 | - | - | |
| Car05g01188 | 410 | Gene3D | - | 1 | 183 | IPR027417 | - | |
| Car05g01188 | 410 | SUPERFAMILY | PRTase-like | 183 | 400 | IPR029057 | - | |
| Car05g01188 | 410 | Pfam | Phosphoribulokinase / Uridine kinase family | 16 | 168 | IPR006083 | GO:0005524|GO:0016301 | |
| Car05g01188 | 410 | Gene3D | - | 184 | 399 | IPR029057 | - | |
| Car05g01188 | 410 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 6 | 173 | IPR027417 | - | |
| Car05g01188 | 410 | CDD | UMPK | 1 | 180 | IPR000764 | - | |
| Car05g01188 | 410 | PANTHER | URIDINE KINASE | 1 | 401 | - | - | |
| Car05g01188 | 410 | PRINTS | Uridine kinase signature | 12 | 23 | - | - | |
| Car05g01188 | 410 | PRINTS | Uridine kinase signature | 57 | 72 | - | - | |
| Car05g01188 | 410 | PRINTS | Uridine kinase signature | 112 | 122 | - | - | |
| Car05g01188 | 410 | PRINTS | Uridine kinase signature | 126 | 137 | - | - | |
| Car05g01188 | 410 | PRINTS | Uridine kinase signature | 148 | 161 | - | - | |
| Car05g01188 | 410 | CDD | PRTases_typeI | 257 | 372 | IPR000836 | - | |
| Car05g01188 | 410 | Pfam | Uracil phosphoribosyltransferase | 198 | 399 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car05g01188 | Car-Chr5 | 54696182 | 54701895 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car05g01188 | 1 | 402 | PRT Gene Family | AT4G26510 | 88.557 | 0.0 | 741 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g01188 | K00876 | - | gmx:100527893 | 778.859 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car05g01188 | 05 | 54696182 | 54701895 | Car05g01188 | 05 | 54696182 | 54701895 | ECH | |
| Car05g01188 | 05 | 54696182 | 54701895 | Car02g02167 | 02 | 51866867 | 51873374 | PCT |