Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01173 ATGAAATTAAATAATAGTAGTCTCATAGCCCTTCTTCTAGGCCGTAGTATCCGCCGGAGATTGGTCCAATCGACTCTCTTCCCTCACAAGCCACCAGAACCCCGCAACAAACCGGATGAGAACACCGACAGTGGTGACGAACAAGACGAGGATTACTGCGATACGAAGAATCGCAGGAAGAGAAAATCCAAAGCAAAAGTTACTCCCGTAGCAAAAGGTTCCAAGAGTGCCACACCAAAGAAAAATGCATCTGCTAATGGAGTTATGGCGTCAACTTCACGGAATGTTTTTGCTGATTTCGATAAGGTTGCTACATCCGTGCCTGATTTGCGGTTAGAGGCAAAATTGTCAGCTGAGGAAAATTCCAGGATGTTTGCTGGAAGGCAAGTACATCCATTTTTTTCATCATTGAAAGCAGGGAAGAAAGTTCAGGAGCTGTCTGAATCAGGAAGTAATTTCTTCAAAGCTAAGAATGAGGATGAAAGTATTACCTGTGGTCCTATTCATGTATTTGAAAATATCAAGGATGACACCTCATCCCTTGACTGGAGAAACTGGACATTTTTGGGAAATACCACCTATATATTCTATATGTCCAGAAAATCTGTCAGAAACATCACGGACAAATTCAACTTTACCAGAGGATCAAATAATAATGCTCAGATGCCAAAAGATGCCAAAATGGACTCGGAGGTGGATGAATTTGTTACCTTTTCTGTACAAGCTGACTATTTTCGGAAGTCACATTCAGAGCCGCTGAATAGATTTCTTCAAGAAAGTATGAGGTCATACTACATTGGTTGTGAAGATAAGGCACAAAGCAGCTTATGGACATACAAATACAAGCCAACAAAGGCTGTCGAGGTATGTGGTAACGACAAAGCTGTGAATTTCTTGAGTGACTGGCTACATCAGTGGCATGAAAGACCTTACAAACCCAGGAAGGAAACATCTAATAGAAATACAAGGGTCATGCCAAATGATGATGATGATTTTATCTGTTTTGACAGTGACTATGATTCGGAAGATATGAATGAAGAGGATTCCCTGCAGAATGTTCTTTTAATTACAGGGCCAATAGGGAGTGGCAAGTCTGCAGCCGTCTATGCTTGTGCCAAAGAGCAAGGGTTTGATATATTAGAGCTCAATGCATCGGATTGTAGAAACGGAAATGTTGTCAAGCAGTATTTTGGAGATACTCTTAGTTCACATGGGTTCAAAAGGTCATCAGACCACACTGTGAGCTCACAGAAGATGACTACAAAGTTGCCCCCAGCTCCTGCTTTGGTTAATGGTAAAGCTGCTGATGAGGTGAATGATGAAGTAGTTGAACTGATAACCGTATCTGATGATGAAGCTCATAGCCCTGGTGGAACATCACAAAAGTTACTTGGCAAGAATAATGTTGTTGCATGTGATAAAGTCCAAACTTTAATCCTGGTTGAGGATGTGGACATCCTTTTTCCTGAAGACCGTGGATGTATTGCTGCCATACAACAGATTGCAGAGACGGCAAGGGGGCCGATCATATTGACCAGCAATAGTGATGATCCTGGCCTGCCAGATAATTTTGATATGCTTCATGTTTCATTCTTATTGCCATCGCCAAAGGAGTTGCTTTGCCATTTGTACTCTGTTTGTCTCACTGAAGGAGCTGACATCCATCCTCTTTTACTGGAGAAGTTTATGCAGTCCTGTGATGGAGATATCCGAAAAACCATTATGCATCTTCAGTTCTGGTTGCAGAGTAAAATATTTAGAAAAGATGGAAAAGCACAAACAGGCTATGGCTCACTTCCATTTGATCTTGAGGTTGGTCATCAGATACTACCAAAGATAATGCCGTGGGGTTTCCCTTCAGAGATATCTGAACTAGTTGAGAATGAATTCGTCAGATCCGTAAATGTAATGGAAGAGAATTCCAGTTTGCAAGAGTTAGTTGAAGAAAAGCCTCTTCACATAAACAAAAGGCAAAATGATTTAGATGAGCAGTGTATGGAAACTGATTATATAAAAGCCAAGAAGGTGGAGATGATTAAGAGAAATGGGTCAATAACAGATTACTATGAGCTTGAAATTCAATACAGAGCCATTTCTGAGTTTTCAAATTCTTCTGGATTGCCTGTAGCATCCTACCTGCAAAATAGTCGACGGAAACTTGTAGTAATGTCCTCTGATTCTGAGGATGAGGACTCAAATAGTCGACACCCTCTAGACACAGATGATGAAGCTAACAAGAGACATTCCTTCAAAGAAAATAATGAATGTGCCTCTGAGCTTCAGTTGAATGATAACTGCCCCAGCACATCTGTTCGTAAACTGGTTTGTTCTGAATTGGCGGATTCAGATGAGGAGCATGTTAAATATTCAGAAACAGCTGATGTTACATGCATAAATGAGACATCTAAATCATTAGATATATCCTGTGTACCAGAATCAACATTTGTTCCTGAGACTACAATTGAAGATGGAACAGAGACAATGTCTGGAGCAGTGTCTTCTTGCCATGCTCTAGAAGTTTCTATAAATAATGAGTTGAAACCATTCACTTCAAGTGTTCGCAGGCGTTTAGCAAAACTGTCACAAAATTCAGATATGTTGATGGATACTGAAATGCCAGATTATTCTCCAAAAGAGGCTTTGCAAGATTTTATAGATCAAAATATGGAAACTACAACTATCAAAGGGATGGATGAGTGCAGTCGCGTAGATTTCAAGCTAAAGTCAACATTTGCTTAG 2739 0.4038 MKLNNSSLIALLLGRSIRRRLVQSTLFPHKPPEPRNKPDENTDSGDEQDEDYCDTKNRRKRKSKAKVTPVAKGSKSATPKKNASANGVMASTSRNVFADFDKVATSVPDLRLEAKLSAEENSRMFAGRQVHPFFSSLKAGKKVQELSESGSNFFKAKNEDESITCGPIHVFENIKDDTSSLDWRNWTFLGNTTYIFYMSRKSVRNITDKFNFTRGSNNNAQMPKDAKMDSEVDEFVTFSVQADYFRKSHSEPLNRFLQESMRSYYIGCEDKAQSSLWTYKYKPTKAVEVCGNDKAVNFLSDWLHQWHERPYKPRKETSNRNTRVMPNDDDDFICFDSDYDSEDMNEEDSLQNVLLITGPIGSGKSAAVYACAKEQGFDILELNASDCRNGNVVKQYFGDTLSSHGFKRSSDHTVSSQKMTTKLPPAPALVNGKAADEVNDEVVELITVSDDEAHSPGGTSQKLLGKNNVVACDKVQTLILVEDVDILFPEDRGCIAAIQQIAETARGPIILTSNSDDPGLPDNFDMLHVSFLLPSPKELLCHLYSVCLTEGADIHPLLLEKFMQSCDGDIRKTIMHLQFWLQSKIFRKDGKAQTGYGSLPFDLEVGHQILPKIMPWGFPSEISELVENEFVRSVNVMEENSSLQELVEEKPLHINKRQNDLDEQCMETDYIKAKKVEMIKRNGSITDYYELEIQYRAISEFSNSSGLPVASYLQNSRRKLVVMSSDSEDEDSNSRHPLDTDDEANKRHSFKENNECASELQLNDNCPSTSVRKLVCSELADSDEEHVKYSETADVTCINETSKSLDISCVPESTFVPETTIEDGTETMSGAVSSCHALEVSINNELKPFTSSVRRRLAKLSQNSDMLMDTEMPDYSPKEALQDFIDQNMETTTIKGMDECSRVDFKLKSTFA 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01173 912 MobiDBLite consensus disorder prediction 24 87 - -
Car05g01173 912 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 100 197 IPR004582 GO:0006281
Car05g01173 912 MobiDBLite consensus disorder prediction 723 749 - -
Car05g01173 912 Gene3D - 534 595 - -
Car05g01173 912 Gene3D - 274 523 IPR027417 -
Car05g01173 912 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 217 912 IPR004582 GO:0006281
Car05g01173 912 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 100 197 - -
Car05g01173 912 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 217 912 - -
Car05g01173 912 MobiDBLite consensus disorder prediction 408 422 - -
Car05g01173 912 CDD AAA 354 408 - -
Car05g01173 912 MobiDBLite consensus disorder prediction 408 428 - -
Car05g01173 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 582 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01173 Car-Chr5 54541964 54549809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01173 277 579 Core DNA Replication Machinery Family AT5G22010 22.540 2.88e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01173 - - gmx:100784209 1191.79