Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01157 ATGGCTATTGTCCAAAACATGCCTCCACCACAAGCTACCTTATCTCAATCTCAATCTCAACCTTCATTTTTTACTAGAGTGGCCATGAGAATATCTAGATCAAGATGTTTCAATTTTTTAAGAAGAGTGTTTCATTACCAAAATGGACCAAGATCTAATCTTGGTTCTAATCCTTTCAATTCAAACACTTGGATGATGTTGGAGTTGATTGCTTTGTTGGTTCAAATAACAAGCACAACATTCACTTTGGTCATTTCAAAGAGTGAAAAACCTGTTTGGCCTATGAGGGTGTGGATAGTAGGTTATGACATTGGATGTGTTCTTAATCTTTTGTTACTTTGTGGTCGTTATCATCAAATAGATGTGAATCAAGGGGATGATGCTCTTGGAATTTCTGATGTGGAACAACAAACAAACAATGAAGAAAATAGTGTATATAGGAGCACACATTTGATGAGCAAATGCAGAAGTTCACTAGAACTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGTCCTTTGACTCACGTTTTGGAACTTTACAAGAAGCACCAAAACTCCAAGTGCTATGCATCATACTTCTTGTTTGGAATGCAATTTGCTACTCTTTGCTTTGTTGTTGTGTTCCCCTCATTAGCACCCTCCTTGGTTACAACATGAACATGGGATCCTCTTCTAAAGGTGCATCTGATGATCAAATCTCACAAATTCCATCTTGGAGATATAAAGTGGCTCATAACAAATTAGATCGAAACGATGATTCTCAATGTAGTGAAAGATTGATCAACGAAGAGCCCGAATGTTGCATATGCTTGGCAAAGTACAAAGACAAAGAAGAAGTTAGGCAATTGCCATGTTCGCATATGTTCCATCTAAATTGTGTGGATCAATGGCTAAGAATTATATCATGCTGCCCTCTTTGCAAACAAGGTTTACAGAGGTAG 948 0.3745 MAIVQNMPPPQATLSQSQSQPSFFTRVAMRISRSRCFNFLRRVFHYQNGPRSNLGSNPFNSNTWMMLELIALLVQITSTTFTLVISKSEKPVWPMRVWIVGYDIGCVLNLLLLCGRYHQIDVNQGDDALGISDVEQQTNNEENSVYRSTHLMSKCRSSLELFFAIWFVMGNVWSFDSRFGTLQEAPKLQVLCIILLVWNAICYSLLCCCVPLISTLLGYNMNMGSSSKGASDDQISQIPSWRYKVAHNKLDRNDDSQCSERLINEEPECCICLAKYKDKEEVRQLPCSHMFHLNCVDQWLRIISCCPLCKQGLQR 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01157 315 Pfam Ring finger domain 268 310 IPR001841 -
Car05g01157 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 314 IPR013083 -
Car05g01157 315 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 314 - -
Car05g01157 315 ProSiteProfiles Zinc finger RING-type profile. 269 310 IPR001841 -
Car05g01157 315 SMART ring_2 269 309 IPR001841 -
Car05g01157 315 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 15 314 - -
Car05g01157 315 SUPERFAMILY RING/U-box 268 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01157 Car-Chr5 54220650 54224138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01157 23 313 C3H Transcription Factor Family AT4G26580 64.765 5.05e-137 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01157 - - gmx:100818715 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01157 05 54220650 54224138 Car05g01157 05 54220650 54224138 ECH