Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01134 ATGTCAGAATCAAATATGGAGAGAGGAGATTCATTCATCCATTATGGTCAAAATTCAAACTCAGATTCTGGTTCATTTATGTTGCAACAATCTGATGTCCCTAGCATTACAGAAGCTCCAAAAAATGATGGCTCTGTTCCTCAAGTAGCTATGCAAGACAAAAGTACTTTGCCAATAAAAAATGTGACAACTATAATGAGAAAAGGTTTGCCACCAAAATCAAAAATCTCTAATGGTGCAAAAGAAATGGCTGAGCAAAGTGCTTCAAAGTTCATAAACTTAGTGACCAAAAAAGCTGCTGAGCGTTGTCAAAGTGAGTCTAGAATAATTATGGGTGCTGATGATTTATTGTGGGCCATGAAGATTCTGGGCTTTAATGACTATATTGAAGGTCTTACTCTTTATGCCCAACGCTATCGCTGTAGTAATGGGCTTGGGCCTATGCAACCAGTTGTTGAGAGTCCAAAGCCCACTTTACCATCCTTACCACCTTCACCTGATGATGTTGGGCCAAATTCCTCCATGAGCCCAAACACAACTATTGAAATGTATGATGCCATGGACTTGGATGAGTTTTGGGCTGGATTGGATGATTTGGGTATTGGCCCATCAGATAATGCTTCAACTAGCTTTGATACTTCTGTGGAGTTCAACTTTGATAGCATGTTTGGTGAGGAAAATGATGAAATGAACCACTAA 699 0.3948 MSESNMERGDSFIHYGQNSNSDSGSFMLQQSDVPSITEAPKNDGSVPQVAMQDKSTLPIKNVTTIMRKGLPPKSKISNGAKEMAEQSASKFINLVTKKAAERCQSESRIIMGADDLLWAMKILGFNDYIEGLTLYAQRYRCSNGLGPMQPVVESPKPTLPSLPPSPDDVGPNSSMSPNTTIEMYDAMDLDEFWAGLDDLGIGPSDNASTSFDTSVEFNFDSMFGEENDEMNH 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01134 232 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 56 120 IPR003958 -
Car05g01134 232 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 38 144 IPR027113 GO:0001228|GO:0006355|GO:0016602
Car05g01134 232 MobiDBLite consensus disorder prediction 153 167 - -
Car05g01134 232 MobiDBLite consensus disorder prediction 150 176 - -
Car05g01134 232 SUPERFAMILY Histone-fold 55 140 IPR009072 GO:0046982
Car05g01134 232 Gene3D Histone, subunit A 48 145 IPR009072 GO:0046982
Car05g01134 232 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 38 144 - -
Car05g01134 232 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01134 Car-Chr5 53710913 53712785 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01134 6 140 CCAAT-HAP3 Transcription Factor Family AT1G21970 43.243 6.16e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Car05g01134 CBFD_NFYB_HMF 2e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01134 K08065 - tcc:18593281 103.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01134 05 53710913 53712785 Car02g02136 02 51645839 51647101 PCT