Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car05g01127 | atgaacgaaGACGAACGAGGATACGGCGAGAGCGGGGATCCCGTAGATCAATTCCACCCTAACGAAGCTATATCCGCCGTAGCTGACGATGGTTTCTTGGCCGAAGAAGACGAAGATTACGAGGATCTTTACAACGATGTTAATGTCGGTGAGGGTTTCCTTCAATCGTTACACAAAAATGACGATTCAGTAGTTAAAAACGACGACGCTGAAGCTAAAATCTTgccaccaccgccgccgctgccactgccacctccaccgccgctgacaggtcaggttgccggtgtggtttctgtaccgggtgcgggtggtggttccggcgagggtgtcggtgGGGTTTCTGGGTTTCAGAATCAAGGTTTTAGAGGAGGTGGGGTTAGGGTTGAATTAGGGCCGAAATCTGCTAATTTGAGTGAGATTGAGGTGCAGGGTGGTCATGAGGGTGTTGGTTTGCAGGGGATTGTGCAACAGCATTCACTTGGTGTTGTTGGAAATGATGGAAATGATGGATTGGTGAGACAAGGTCAAGGTGTTGGTGGAGGAAATGGGGGTGTGAATAGTGTAAGTGCTGGTAATGGAGGTGGAGGTGAAGGAGGAGGTACTGTATTATTTGTTGGTGATTTGCACTGGTGGACTACAGATGCGGAACTTGAAGCTGAGCTTTGTAAGTATGGGCAAGTGAAGGAAATAAGGTTTTTTGATGAGAAAGCTAGTGGGAAATCCAAAGGGTATTGTCAGGTTGAGTTTTATGATCCTTCAGCTGCAACAGCTTGTAAGGATGGGATGAATGGACATGTGTTTAATGGTAGGCCGTGTGTTGTTGCTTTTGCGTCGCCTTTTACTGTTAAGAAAATGGGAGAGGCTCAGAATAATAGGAGTCAACCAGTGAACCAAAACACAGGGGCTAATCAGGGAAGGAGAGGGCCTGTTGAGGCTGGTGCTACTAGGCCTGGTGGTGGTAATGTTGGGACAGGTGGTAACTTTCAAGGTGGAGATGGGAATAATAGAGGTTACGGTGGAAGAGGTAATTGGGGGAGAGGTAATAATCCTGGAATGGGGAATAGAGGATCTGTTAATCCGATGAGGAATAGGGGAGGTGGGATGGGTGGTAGAGGTATCATGGGTAATGGTGGAAATGGATTTGGACAGGGTCTTGGTGCTGCGCCGCCTATGATGCATCATCAGGCAATGATGAATCAGGGTTTTGATCCGGCTTTTGGTGGTCCCATGGGTAGAATGGGAGGCTATGGAGGGTTTCCCGGTGGCCCGACACCTCCGTTCTCTGGAATGATGCCTTCGTTCCCTGGTGTTGGTATGCCTGGAGTATCACCTCATGTTAATCCTGCCTTCTTTGGAAGAGGGATGCCTATGAATGGTATGGGGATGATGCCGCCGTCAGGCATGGATGGTCCTAATATGGGAATGTGGCCTGATCCAAATATGGGCGGATGGGGCGGTGAAGAACATGGTGGTGGCAAGGCTGCAGAGTCAAGTTATGGGGAGGAAGCTGCGTCTGACCATCAATATGGTGAAGAGAGTCAAGATAGAGCTGGTTGGCCTAATGCTATGAGGGAAAAAGATAGAGGATCAGAGAGAGATTGGTCGGGTTCTTCTGAACGAAGGTTCAAGGATGATAGAGATCAAGGATATGAGAGAGATGTACCTAGAGAAAAAGATGCGGGACATGACCAAGAATGGTCAGAAAGAAGGAGTCGTGATGATAGAGAAGTGGGACGAGGACGATCTcgggaccgtgatcgtgcacgatctcgagaccaggaccgtgaccgtgaaagggatcgggaccgtgatcgtgacAGGCACAGGGAAGATAGGGACAAGTATGCTGATCATCATAGATACAAAGACCGCGAGGCAGAGCATGATGATGAACGAGAGAGGGGTCGGTCGTCAAGGACTCACAGCAAATCACGATTGGCATCACATGAGGAGGAACACCATTCTAGAAAAGATGCTGATTATGGAAAGAGGAGGCGGCTTACCTCTGAATAA | 2013 | 0.4327 | MNEDERGYGESGDPVDQFHPNEAISAVADDGFLAEEDEDYEDLYNDVNVGEGFLQSLHKNDDSVVKNDDAEAKILPPPPPLPLPPPPPLTGQVAGVVSVPGAGGGSGEGVGGVSGFQNQGFRGGGVRVELGPKSANLSEIEVQGGHEGVGLQGIVQQHSLGVVGNDGNDGLVRQGQGVGGGNGGVNSVSAGNGGGGEGGGTVLFVGDLHWWTTDAELEAELCKYGQVKEIRFFDEKASGKSKGYCQVEFYDPSAATACKDGMNGHVFNGRPCVVAFASPFTVKKMGEAQNNRSQPVNQNTGANQGRRGPVEAGATRPGGGNVGTGGNFQGGDGNNRGYGGRGNWGRGNNPGMGNRGSVNPMRNRGGGMGGRGIMGNGGNGFGQGLGAAPPMMHHQAMMNQGFDPAFGGPMGRMGGYGGFPGGPTPPFSGMMPSFPGVGMPGVSPHVNPAFFGRGMPMNGMGMMPPSGMDGPNMGMWPDPNMGGWGGEEHGGGKAAESSYGEEAASDHQYGEESQDRAGWPNAMREKDRGSERDWSGSSERRFKDDRDQGYERDVPREKDAGHDQEWSERRSRDDREVGRGRSRDRDRARSRDQDRDRERDRDRDRDRHREDRDKYADHHRYKDREAEHDDERERGRSSRTHSKSRLASHEEEHHSRKDADYGKRRRLTSE | 670 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car05g01127 | 670 | MobiDBLite | consensus disorder prediction | 286 | 305 | - | - | |
Car05g01127 | 670 | SUPERFAMILY | RNA-binding domain, RBD | 199 | 305 | IPR035979 | GO:0003676 | |
Car05g01127 | 670 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Car05g01127 | 670 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 203 | 272 | IPR000504 | GO:0003723 | |
Car05g01127 | 670 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 201 | 279 | IPR000504 | GO:0003723 | |
Car05g01127 | 670 | PANTHER | CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR | 1 | 669 | IPR034772 | - | |
Car05g01127 | 670 | MobiDBLite | consensus disorder prediction | 474 | 670 | - | - | |
Car05g01127 | 670 | CDD | RRM_CFIm68_CFIm59 | 203 | 276 | - | - | |
Car05g01127 | 670 | Gene3D | - | 197 | 343 | IPR012677 | - | |
Car05g01127 | 670 | MobiDBLite | consensus disorder prediction | 286 | 358 | - | - | |
Car05g01127 | 670 | SMART | rrm1_1 | 202 | 275 | IPR000504 | GO:0003723 | |
Car05g01127 | 670 | MobiDBLite | consensus disorder prediction | 505 | 670 | - | - | |
Car05g01127 | 670 | PANTHER | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE | 1 | 669 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car05g01127 | Car-Chr5 | 53578831 | 53582978 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Car05g01127 | 174 | 277 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 31.132 | 1.72e-07 | 52.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car05g01127 | K14398 | - | gmx:100782869 | 680.248 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Car05g01127 | 05 | 53578831 | 53582978 | Car05g01127 | 05 | 53578831 | 53582978 | ECH |