Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01127 atgaacgaaGACGAACGAGGATACGGCGAGAGCGGGGATCCCGTAGATCAATTCCACCCTAACGAAGCTATATCCGCCGTAGCTGACGATGGTTTCTTGGCCGAAGAAGACGAAGATTACGAGGATCTTTACAACGATGTTAATGTCGGTGAGGGTTTCCTTCAATCGTTACACAAAAATGACGATTCAGTAGTTAAAAACGACGACGCTGAAGCTAAAATCTTgccaccaccgccgccgctgccactgccacctccaccgccgctgacaggtcaggttgccggtgtggtttctgtaccgggtgcgggtggtggttccggcgagggtgtcggtgGGGTTTCTGGGTTTCAGAATCAAGGTTTTAGAGGAGGTGGGGTTAGGGTTGAATTAGGGCCGAAATCTGCTAATTTGAGTGAGATTGAGGTGCAGGGTGGTCATGAGGGTGTTGGTTTGCAGGGGATTGTGCAACAGCATTCACTTGGTGTTGTTGGAAATGATGGAAATGATGGATTGGTGAGACAAGGTCAAGGTGTTGGTGGAGGAAATGGGGGTGTGAATAGTGTAAGTGCTGGTAATGGAGGTGGAGGTGAAGGAGGAGGTACTGTATTATTTGTTGGTGATTTGCACTGGTGGACTACAGATGCGGAACTTGAAGCTGAGCTTTGTAAGTATGGGCAAGTGAAGGAAATAAGGTTTTTTGATGAGAAAGCTAGTGGGAAATCCAAAGGGTATTGTCAGGTTGAGTTTTATGATCCTTCAGCTGCAACAGCTTGTAAGGATGGGATGAATGGACATGTGTTTAATGGTAGGCCGTGTGTTGTTGCTTTTGCGTCGCCTTTTACTGTTAAGAAAATGGGAGAGGCTCAGAATAATAGGAGTCAACCAGTGAACCAAAACACAGGGGCTAATCAGGGAAGGAGAGGGCCTGTTGAGGCTGGTGCTACTAGGCCTGGTGGTGGTAATGTTGGGACAGGTGGTAACTTTCAAGGTGGAGATGGGAATAATAGAGGTTACGGTGGAAGAGGTAATTGGGGGAGAGGTAATAATCCTGGAATGGGGAATAGAGGATCTGTTAATCCGATGAGGAATAGGGGAGGTGGGATGGGTGGTAGAGGTATCATGGGTAATGGTGGAAATGGATTTGGACAGGGTCTTGGTGCTGCGCCGCCTATGATGCATCATCAGGCAATGATGAATCAGGGTTTTGATCCGGCTTTTGGTGGTCCCATGGGTAGAATGGGAGGCTATGGAGGGTTTCCCGGTGGCCCGACACCTCCGTTCTCTGGAATGATGCCTTCGTTCCCTGGTGTTGGTATGCCTGGAGTATCACCTCATGTTAATCCTGCCTTCTTTGGAAGAGGGATGCCTATGAATGGTATGGGGATGATGCCGCCGTCAGGCATGGATGGTCCTAATATGGGAATGTGGCCTGATCCAAATATGGGCGGATGGGGCGGTGAAGAACATGGTGGTGGCAAGGCTGCAGAGTCAAGTTATGGGGAGGAAGCTGCGTCTGACCATCAATATGGTGAAGAGAGTCAAGATAGAGCTGGTTGGCCTAATGCTATGAGGGAAAAAGATAGAGGATCAGAGAGAGATTGGTCGGGTTCTTCTGAACGAAGGTTCAAGGATGATAGAGATCAAGGATATGAGAGAGATGTACCTAGAGAAAAAGATGCGGGACATGACCAAGAATGGTCAGAAAGAAGGAGTCGTGATGATAGAGAAGTGGGACGAGGACGATCTcgggaccgtgatcgtgcacgatctcgagaccaggaccgtgaccgtgaaagggatcgggaccgtgatcgtgacAGGCACAGGGAAGATAGGGACAAGTATGCTGATCATCATAGATACAAAGACCGCGAGGCAGAGCATGATGATGAACGAGAGAGGGGTCGGTCGTCAAGGACTCACAGCAAATCACGATTGGCATCACATGAGGAGGAACACCATTCTAGAAAAGATGCTGATTATGGAAAGAGGAGGCGGCTTACCTCTGAATAA 2013 0.4327 MNEDERGYGESGDPVDQFHPNEAISAVADDGFLAEEDEDYEDLYNDVNVGEGFLQSLHKNDDSVVKNDDAEAKILPPPPPLPLPPPPPLTGQVAGVVSVPGAGGGSGEGVGGVSGFQNQGFRGGGVRVELGPKSANLSEIEVQGGHEGVGLQGIVQQHSLGVVGNDGNDGLVRQGQGVGGGNGGVNSVSAGNGGGGEGGGTVLFVGDLHWWTTDAELEAELCKYGQVKEIRFFDEKASGKSKGYCQVEFYDPSAATACKDGMNGHVFNGRPCVVAFASPFTVKKMGEAQNNRSQPVNQNTGANQGRRGPVEAGATRPGGGNVGTGGNFQGGDGNNRGYGGRGNWGRGNNPGMGNRGSVNPMRNRGGGMGGRGIMGNGGNGFGQGLGAAPPMMHHQAMMNQGFDPAFGGPMGRMGGYGGFPGGPTPPFSGMMPSFPGVGMPGVSPHVNPAFFGRGMPMNGMGMMPPSGMDGPNMGMWPDPNMGGWGGEEHGGGKAAESSYGEEAASDHQYGEESQDRAGWPNAMREKDRGSERDWSGSSERRFKDDRDQGYERDVPREKDAGHDQEWSERRSRDDREVGRGRSRDRDRARSRDQDRDRERDRDRDRDRHREDRDKYADHHRYKDREAEHDDERERGRSSRTHSKSRLASHEEEHHSRKDADYGKRRRLTSE 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01127 670 MobiDBLite consensus disorder prediction 286 305 - -
Car05g01127 670 SUPERFAMILY RNA-binding domain, RBD 199 305 IPR035979 GO:0003676
Car05g01127 670 MobiDBLite consensus disorder prediction 1 20 - -
Car05g01127 670 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 272 IPR000504 GO:0003723
Car05g01127 670 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 279 IPR000504 GO:0003723
Car05g01127 670 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 669 IPR034772 -
Car05g01127 670 MobiDBLite consensus disorder prediction 474 670 - -
Car05g01127 670 CDD RRM_CFIm68_CFIm59 203 276 - -
Car05g01127 670 Gene3D - 197 343 IPR012677 -
Car05g01127 670 MobiDBLite consensus disorder prediction 286 358 - -
Car05g01127 670 SMART rrm1_1 202 275 IPR000504 GO:0003723
Car05g01127 670 MobiDBLite consensus disorder prediction 505 670 - -
Car05g01127 670 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01127 Car-Chr5 53578831 53582978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01127 174 277 Eukaryotic Initiation Factors Gene Family AT4G34110 31.132 1.72e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01127 K14398 - gmx:100782869 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01127 05 53578831 53582978 Car05g01127 05 53578831 53582978 ECH