Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01126 ATGACAAATGCGGAAATAACAGCGTGGGTTGAAAAAATTGGATATGGCAAAGAAACAGTAGAGTCGGAGTCAGACACCGGACAGATACGAAATCAACGGCAAGTTGAACCGAACCGAACCGTTGGAAAGTCGAGGATGGCGGACTCCGATAACGACTCCGGCGGACCACACAACGGTGGCGGATCGAACGCTCACGGCGAGATGTCACCGAGAGAACAGGACAGGTTCCTCCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCACTTCCAGCGAACGCGAAGATCTCAAAGGACGCAAAGGAGACGGTTCAGGAGTGTGTGTCGGAGTTCATAAGTTTCATCACCGGCGAAGCTTCCGACAAGTGCCAGCGAGAGAAGCGTAAGACAATCAACGGCGACGATCTGCTTTGGGCGATGACGACACTTGGATTTGAGGAATATGTCGAGCCACTAAAGGTTTACCTTCAGCGATTTAGGGAGATGGAAGGGGAGAAGTGTGTGGCGGCGCGTGATAAAGACGCGCCTCAATCTTCTAATAATGTGAGTAACAGTTCCTTTGAGAGTGGTAGTTATGGTGGTGGAATAATGATGCATCAAGGACACGTGTATGGCTCTGGTGGGTTTCATCAAGTGGGAGGTACTACTGTCATGGGTAAGGGTGGGCCTGGTTATTCTGGACCTGGATCTAATGCCGGTAGGCCCAGATAG 711 0.5105 MTNAEITAWVEKIGYGKETVESESDTGQIRNQRQVEPNRTVGKSRMADSDNDSGGPHNGGGSNAHGEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKCVAARDKDAPQSSNNVSNSSFESGSYGGGIMMHQGHVYGSGGFHQVGGTTVMGKGGPGYSGPGSNAGRPR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01126 236 MobiDBLite consensus disorder prediction 21 39 - -
Car05g01126 236 MobiDBLite consensus disorder prediction 19 70 - -
Car05g01126 236 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 76 140 IPR003958 -
Car05g01126 236 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 46 200 - -
Car05g01126 236 SUPERFAMILY Histone-fold 73 177 IPR009072 GO:0046982
Car05g01126 236 Gene3D Histone, subunit A 65 189 IPR009072 GO:0046982
Car05g01126 236 PRINTS CCAAT-binding transcription factor subunit A signature 142 160 - -
Car05g01126 236 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Car05g01126 236 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Car05g01126 236 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 46 200 IPR027113 GO:0001228|GO:0006355|GO:0016602
Car05g01126 236 MobiDBLite consensus disorder prediction 217 236 - -
Car05g01126 236 ProSitePatterns NF-YB/HAP3 subunit signature. 107 123 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01126 Car-Chr5 53575677 53576918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01126 46 204 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.988 2.03e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Car05g01126 CBFD_NFYB_HMF 2.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01126 K08065 - gmx:100813169 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01126 05 53575677 53576918 Car05g01126 05 53575677 53576918 ECH