Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01121 ATGAGCAGTAGTTTTGCTTCCTCCTCTATATCTTCTTCGGTGGTGTCTTTGAAAAAAtatgatgtttttcttagctttcgaggtgaggatactcgcagaaacttcacgagccatctttatgatgctctgagtcgaaagaaagttgaaacctttatagacaacaatgagcttaaaaaaggagatgagatctcgccagcactagccaaagccattgaggagtcacacgcatctatagtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattctagaatgcaagaaagataaggaacagattgtgatcccggttttttacaacatagatccttcacatgtgaggaagcagaccgggagttaccagaaagcctttgcagaacataagcgagatttgatgtacaataatgacaagttgcagaaatggaaagctgctctcactgaggcagctaatttagttggttgggactctcaaaaGTATAGgattgaatcggacttcattaaggacattgtcaaagatgttttgcggcaattgaatcttagatacccatatgaaattaagggggttgttggaattgagaaaaattatgaacaaattgaatcaatgctgaaaattgggtcaaatgatgttagagtccttggaatatggggcatgggtggcataggaaagaccactcttgctaaggctttatattccaaactatgttcccaatttgaaggccgttgcttcgtcaatgtaatggatgaatcaaaaaagtatggactcaatgttgtgcacaataatttttattctacattgttagaggaagaaaatcttcatcatgatgcaccctacatagaggcacctttctccatgagaaggattgcacgtaaaaaagttttcattgtgttggatggcgtcgaaacctcagagcaaatagaagatcttatcctaaaaattgatgagctgggagtgggtagtagggtcattattacaactagaaataagcacatatttagtcagttcagtaaatgtgaaatttatgaggttaaggaattgaaaaaacatgattctcttcagcttttcaatttgactgtctttggagatgaacatccaaaaattggatatgaagatttatcagaaagtgtagtgtcctattgcaaaggcaatcctctggctttaaaagttttaggtgcaaatctccgttcaagaggcaaagaatcatgggaaaatgaattgaaaaagctccaaaagattcccaatgggagaatttataatgtgttaaagttgagttatgatgacttagattgttctcaaaaggccatatttctagatatcgcatgcttgttgagagaagagcataaagattttataatagatctattggaagcttgcgacttctttgcaataagtgggatagaagtccttctagataaagctctcatacaactaaaactaatttggcatgtcatttcagatattgatactatagaaatgcatgatttgttacaagaaatgggacgggagattgttaatcaagaatctcaagaccctggaaaacgaagtcgattgtggaaagctgaagaaatatctgatgtattgaaaaaaaacaagggaactgaagctgtggaaggtataacattccatagtacagaagttggggatctatacttgaatgctgattcctttagaaggatgacaaacttaagatatcttaaaatctataatatatatgatgggagaatatgcaatgtgtacttccctgacggtcttgagtggctttctgataaattgaggtaccttcgatgggatggatactgtcttgagtctttgccgtcaactttttgtgctgaaatgcttacagagcttcacatgagtcatagcaagcttaaaaagctctgggatggagttcagAATCTTCTGAATCTAACCATAATTTGGCTTGAATCctccaaagatctgattgagatcccagacttatcaaaggctacaaatcttgaaagagtatatcttagtgaatgtgaaagcctgTGTCAGCTCCATCCATCCATTTTTTCTCTCCCCAGGCTTACACATCTAGGCTTAGGAGGTTGCATAAAGATTGAAAGCCTTAAAACCAATATTCATTCAAAATCTCTCTCTAAACTTTTACTTGATGGTTGTTCATCTCTCATGGAATTTTCGGTGACTTCAGAGGAAATGACATATTTGACCTTACGTGGCACCGCTATACATGAATTGCCTTCATCGATTTGGCGTAATACCAAACTTACTTTTCTTGACCTAACTGAATGTTGCAAGCTTAACACTGTTGGGTTGTCAAATGATCCGCAGCTATGGTCTATTACAGTACTGAACCTTTGTGGGTGCTCACAAATAAATGCATTGAATCTGTTGTTCATCCTTGATGGCATACAGTCTTTAAAACAACTAAAGCTGAATGAGTGCTTCAACTTAGAAGTTCTCCCTGATAACATCCAAAACCATTCAAGGCTAGAATGGCTTGATTTAGATGATTGCAGGATACTTGTGTCTCTATCAGAGCTTCCACCATCCGTGCTATATTTGAAAGCCGCTAATTGCACTTATCTGGACACAGACTCCACTCAACAGTCATTGCTTGAGAACATGTTACAAACCTTCTCTGAATACCATTCTGACGAAGGTGTTGATGCTTTCTCTTTCTTGCCAGGAACACGAGTTCCCTTTAAGTTTGATTTTCAGACATTAGAGGCTTCAATAACTATTCCTCCTATCCCAAAATCTGACTTGTGTGGTTTCATATTTTGCATCATTCTTTCTGAGGGCTTCAATGTTTACCACCATGCCCTTCATTGTTTCATCTTTGAACACGGCAAAGAAGTTGACAGATGTCGTATTAGTCACAGTTATCTTGGGACATTAATTTCAGATCATGTATGGATATGCTGGCATGATTACAACAGACAAGAAAGTGGAAGTTCTGATTGCAACCTATCATTTCAATTCATACTTGAAGCTCATAAGGAACAATCTTGGTGGTCAACTGAGGGGATAAAGGGGTGTGGGGTGTTACCTGTATATGCCTCCTTAGAACGTGAGTTGGAGCTGGATGGTAGTAGTATTAGTGAAGAAATTGTTGAATTAATATCCAATGCTCAAGCAATGAAAAATGATATTGATGAGTTACAGCCTAGAGCAATTGGAAGTGAAGTCAGAAGCTCTAATAATGAAAATGAAGATGACCATGAACAACCTTATTCTCACAGTGAAGTGGAAGACTTGAATGAAAAGTCTTGTGGTTGTTCAATCGGTCTTTTCCTGAGGCACTTATTAAAGAGGGTCGAAAGAATAATACAAATCAGAAATGACTTGCGTAGACTGGTGATATCAAGTTGTGCTGTTTTCAGTTATCATTGGGGACCGTCCCTATGCTATCCACTTGTGGCTTTTCATGTTACATTACCTTTGTTGATGCAAAGGCTTCTTGCGGATGGAATTAAATCAAGCATCATATAG 3498 0.1741 MSSSFASSSISSSVVSLKKYDVFLSFRGEDTRRNFTSHLYDALSRKKVETFIDNNELKKGDEISPALAKAIEESHASIVIFSENYASSKWCLNELKKILECKKDKEQIVIPVFYNIDPSHVRKQTGSYQKAFAEHKRDLMYNNDKLQKWKAALTEAANLVGWDSQKYRIESDFIKDIVKDVLRQLNLRYPYEIKGVVGIEKNYEQIESMLKIGSNDVRVLGIWGMGGIGKTTLAKALYSKLCSQFEGRCFVNVMDESKKYGLNVVHNNFYSTLLEEENLHHDAPYIEAPFSMRRIARKKVFIVLDGVETSEQIEDLILKIDELGVGSRVIITTRNKHIFSQFSKCEIYEVKELKKHDSLQLFNLTVFGDEHPKIGYEDLSESVVSYCKGNPLALKVLGANLRSRGKESWENELKKLQKIPNGRIYNVLKLSYDDLDCSQKAIFLDIACLLREEHKDFIIDLLEACDFFAISGIEVLLDKALIQLKLIWHVISDIDTIEMHDLLQEMGREIVNQESQDPGKRSRLWKAEEISDVLKKNKGTEAVEGITFHSTEVGDLYLNADSFRRMTNLRYLKIYNIYDGRICNVYFPDGLEWLSDKLRYLRWDGYCLESLPSTFCAEMLTELHMSHSKLKKLWDGVQNLLNLTIIWLESSKDLIEIPDLSKATNLERVYLSECESLCQLHPSIFSLPRLTHLGLGGCIKIESLKTNIHSKSLSKLLLDGCSSLMEFSVTSEEMTYLTLRGTAIHELPSSIWRNTKLTFLDLTECCKLNTVGLSNDPQLWSITVLNLCGCSQINALNLLFILDGIQSLKQLKLNECFNLEVLPDNIQNHSRLEWLDLDDCRILVSLSELPPSVLYLKAANCTYLDTDSTQQSLLENMLQTFSEYHSDEGVDAFSFLPGTRVPFKFDFQTLEASITIPPIPKSDLCGFIFCIILSEGFNVYHHALHCFIFEHGKEVDRCRISHSYLGTLISDHVWICWHDYNRQESGSSDCNLSFQFILEAHKEQSWWSTEGIKGCGVLPVYASLERELELDGSSISEEIVELISNAQAMKNDIDELQPRAIGSEVRSSNNENEDDHEQPYSHSEVEDLNEKSCGCSIGLFLRHLLKRVERIIQIRNDLRRLVISSCAVFSYHWGPSLCYPLVAFHVTLPLLMQRLLADGIKSSII 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01121 1165 Gene3D Ribonuclease Inhibitor 708 873 IPR032675 -
Car05g01121 1165 Gene3D - 183 348 IPR027417 -
Car05g01121 1165 MobiDBLite consensus disorder prediction 1068 1085 - -
Car05g01121 1165 Pfam TIR domain 19 188 IPR000157 GO:0007165
Car05g01121 1165 Pfam NB-ARC domain 200 422 IPR002182 GO:0043531
Car05g01121 1165 Pfam Leucine Rich Repeat 620 638 IPR011713 -
Car05g01121 1165 Gene3D - 17 182 IPR035897 -
Car05g01121 1165 Gene3D - 352 436 IPR042197 -
Car05g01121 1165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 446 IPR027417 -
Car05g01121 1165 ProSiteProfiles TIR domain profile. 18 185 IPR000157 GO:0007165
Car05g01121 1165 Gene3D Ribonuclease Inhibitor 528 707 IPR032675 -
Car05g01121 1165 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 1065 - -
Car05g01121 1165 SMART till_3 19 159 IPR000157 GO:0007165
Car05g01121 1165 MobiDBLite consensus disorder prediction 1064 1085 - -
Car05g01121 1165 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 1065 IPR044974 GO:0006952
Car05g01121 1165 SUPERFAMILY L domain-like 499 869 - -
Car05g01121 1165 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Car05g01121 1165 PRINTS Disease resistance protein signature 827 843 - -
Car05g01121 1165 PRINTS Disease resistance protein signature 219 234 - -
Car05g01121 1165 PRINTS Disease resistance protein signature 294 308 - -
Car05g01121 1165 PRINTS Disease resistance protein signature 387 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01121 Car-Chr5 53474510 53482988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01121 16 858 WRKY Transcription Factor Family AT4G12020 33.567 4.38e-102 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01121 - - mtr:MTR_3g058670 1424.45