Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01112 ATGGCGGTTTCATCTCTCTCATCAACACTCGTTCCTTCACTTTCTCTCTCCAATTCTAACCCTTCATTATCTTCCAAGCCAAAGTTCCAATCTTTATCCTTTCTCTCCGGCAACACTTTGAGGCTTACAAACCCAACAAAACCTTTTCATTCATCAACTGTGGTTTGTGCTGCTCCAGAAGTTTTGAATTCCGCTGATACCAAAGATGTTGAGTCTCTTAACAGTTCCTTTCAGGTTGGTGATTTGGAGACTCCGAGCACTTCTAAGATTAGCATTGAGGCGGATGCAGACATGATGGCACCGAAGCAGAAAATTAGAATCAAGCTTAGATCTTACTGGGCAGACTTGATCGAGGATTCCTGCAAGCAGATATTAGATGCAGCAAGAACTACCAATGCCAAAACAATGGGTCCTGTACCTTTACCAACCAAGAAGCGAATTCACTGTCTACTTAAATCTCCACATGTACACAAAGATGCTCGATTCCATTTCGAAGTTAGAACTCATCAGCGTCTCATTGATATTCTATATCCTACAGCCCAAACAATAGATTCTCTTATGCAACTTGATCTTCCTGCTGGTGTTGATGTCGAGGTTAAGCTCTGA 606 0.4208 MAVSSLSSTLVPSLSLSNSNPSLSSKPKFQSLSFLSGNTLRLTNPTKPFHSSTVVCAAPEVLNSADTKDVESLNSSFQVGDLETPSTSKISIEADADMMAPKQKIRIKLRSYWADLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIHCLLKSPHVHKDARFHFEVRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01112 201 Hamap 30S ribosomal protein S10 [rpsJ]. 102 201 IPR001848 GO:0003735|GO:0005840|GO:0006412
Car05g01112 201 Gene3D Ribosomal protein S10 domain 90 201 IPR036838 -
Car05g01112 201 PRINTS Ribosomal protein S10 family signature 104 117 IPR001848 GO:0003735|GO:0005840|GO:0006412
Car05g01112 201 PRINTS Ribosomal protein S10 family signature 139 154 IPR001848 GO:0003735|GO:0005840|GO:0006412
Car05g01112 201 PRINTS Ribosomal protein S10 family signature 160 174 IPR001848 GO:0003735|GO:0005840|GO:0006412
Car05g01112 201 SUPERFAMILY Ribosomal protein S10 104 201 IPR036838 -
Car05g01112 201 MobiDBLite consensus disorder prediction 1 26 - -
Car05g01112 201 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 201 IPR001848 GO:0003735|GO:0005840|GO:0006412
Car05g01112 201 SMART Ribosomal_S10_2 106 200 IPR027486 -
Car05g01112 201 Pfam Ribosomal protein S10p/S20e 106 200 IPR027486 -
Car05g01112 201 ProSitePatterns Ribosomal protein S10 signature. 128 143 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car05g01112 201 PANTHER BNAC05G40270D PROTEIN 1 201 - -
Car05g01112 201 TIGRFAM rpsJ_bact: ribosomal protein uS10 103 200 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01112 88 201 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 28.696 2.34e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01112 K02946 - gmx:100306286 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01112 05 53088086 53090651 Car05g01112 05 53088086 53090651 ECH