Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01100 ATGACTAAGCATGACCCTCTAGAAGAGTCCCTTTTGAAGGGTGAAGCTAGTGTAAGCAAAAGCAACGGTTCGTATTCCAAAGAGACAAAAGGAAATGATATTTTAACCAGTTATTCAAATGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATGAGTCCACTGATAACTCTAGGCAGTAAAAAGACATTAGACCATGAACACCTACCACTTCTATCTACCAATGACACTGCCTATGGTACTTTCTCAACTTTTAGAAACAAGCTCGAGTCGGAGTGTGGTAATGTTAGGAGTGTGACGACTATTAAGCTTGCCAAGGTTTTGTTCTTTTCAACACGGCAAGGGATTCTTCTATCTGGCTTATTTGCATTATTGTTCACATGTGCTTCTTATGTAGGACCTTATCTTATTGACAATCTTGTTCAATATCTCAATGAAGAAAACAAGGTTAAAAAGGATGGATATATTTTGGCTATTGCATTTATTGCTGCAAAGCTTGTTGAGTGCCTTTTCATGAGGCATTGGATGTTTAAGTTCCAACAAGTTGGGGTCAGGATGCAATCAATGTTGGTGTCAATGATCTATGCGAAAGGTTTGACACTTTCGCGTCAATCGAAGGAAGGACACAGCAGCGGTGAAATCATAAACTTATTGACTGTTGATGCTGCAAGGATAGGCGAATTTTGTTGGTACATGCATGATCCATGGATGGCTGTTTTGCAAGTTTCATTGGCTTTGTTTATTCTTCATAGAAGTGTAGGCGTTGCTTCGATAGCCGCTTTTGCTGCAACTGTAGTTGTGATGTTGCTAAACCTTCCTGTGGCATCATTGCAAGAGAAGTTCCAAGGCAAGTTAATGGAGTTCAAAGATAAAAGAATGAAGGCGACGTCCGAGATTCTAATGAACATGAGGATTCTTAAACTTCAAGCATGGGAGATGAAGTTCTTATCGAAGATTATTCAGCTTCGAAAGACAGAGGAAATGTGGCTAAAGAAATTTCTTGTTGGTACAGCAATTGTTAGATTTCTCTTCTTTAATGCACCAACATTCGTGGCTGTTGTTACTTTCGGTGCTTGTGTTCTTCTAGGCATTCCACTTGAATCAGGAAAGATCTTATCAGCACTTGCAACATTCAGAATTCTTCAAATGCCTATATACAATCTTCCCGACACAATTTCAATGATTGCACAAACAAAGGTGTCTCTGGATAGGGTTGTCGCGTTTCTTCGTTTGAATGACTTGCAAACTGATGTAGTTGAGAAGCTTCCACGAGGTAGTTCTGATATAGCAGTTGAAATAGTAGATGGAAGATTCTCTTGGGATGTATCTTGTGTCAATAACACAACATTGAAAAACATAAATCTTAGAGTTTTTCATGGCATGAGGGTTGCTGTTTGTGGTACTGTTGGATCGGGAAAGTCAAGTTTACTTTCTTGTATAATAGGGGAAATACCAAAGATATCCGGCACCTTAAAGGTGTGTGGAACAAAGGCTTATGTTTCTCAGTCTCCATGGATACAGAGTGGCAAGATAGAAGAGAATGTACTATTTGGTAGAGAGATGGATAGGGAAAAATATGAGAGGGTGATAGAAGCATGTTCATTGAAGAAAGACTTAGAGGTTCTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATTGCCCGTGCGCTTTACCAAGATGCTGATATATATCTGCTCGACGATCCGTTTAGTGCTGTTGATGCTCATACAGGATCTCATCTCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACTAAAACTGTGATATACATAACACATCAAGTAGAGTTTTTACCAGATGCTGATCTGATACTGGTCATGAAAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTTAAGTCAGGAACCGATTTTATGGAACTTGTAGGCGCACATAGAGCCGCGTTGTCTTCGGTTAAGTCCTTAGAAAGAAGGATTTCATTTAAAACATCGAGTATTACTGGGGAAGACACAGGTTCATTAAGTGATTTTGAACTTGAGCAAGAAGTGGAAAACATAGACGATCAAAATGGACAGTTAGACGAAACAGTTAAGCCAAAAGGCCAACTTGTTCAAGAAGAAGAACGCGAAAAGGGAAGAGTCGGGTTTAATGTCTTCTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTATGCCTTTCATATTTATTTCACAGATACTCACTGTGGTTTTACAAATTGCAAGCAATTTTTGGATGGCTTTGGCAACTCCTGTTTCAGCGACTACGGAGCCTGATATCGGAAGCCTTACTCTTATGGTTGTCTATGTTTCTTTGGCAATTGGAAGTTCCTTTGCCACCCTTGCCAGAGCATTTCTTGCTATCATAGCTGGATACAAGACTGCCACCATGCTCTTCAAGCAAATGCATTTGAGCTTTATTCGAGCACCAATGTCATTTTTTGATTCCACCCCAAGCGGACGAATTCTTAATAGAGCTTCAACAGACCAAAGTGCAATAGATATGACCATTCCAAATATTGCATGGGGATTTACATACAATGTGGTTCAGCTCTTAGGAAATATTGCTGTGATGTCTCAAGCTGCATGGCAGGTGTTCATAGTGTTGATTCCTGTCATGGCAGCTTGCATATGGTACCAGCGATATTACTCAGCATCAGCGCGGGAATTGGCGCGATTAACTGGTATATGTCAAGCTCCAGTAATACAACATTTTTCTGAAACAATTTCTGGAGCAACAACTATAAGAAGTTTTGAGCAACAATCAAGGTTTAATGAAATTAATATGAAATTGATTGACAAATATTCCCAACCTAAATTATACAGCGCTAGTGCAATGGAATGGCTGAGTTTCAGATTGGATATTTTATCCTCTACCATATTTGCCTTCTGTTTGGTTTTCTTGATATCTTTTCCAAGTTCAATAGCGGATCCTAGCATTGCGGGATTGGCTGTTACATATGGGATTAATCTAAATTCTGTACAATTTAATTTAATCTGGTTTCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCTATCCCAAGTGAAGCACCTCTTGTAATAGAAGACAACCGACCAGATCATTCTTGGCCATCATTCGGAGAGGTTCATATCCAAGATTTACAaGTTCAATATGCTCCTCACTTGCCTCTTGTCTTACGCGGACTTACATGCACTTTTATTCCTGGAGCAAAAACTGGCATTGTGGGAAGAACGGGAAGTGAAAAAACAACTCTAGTTCAAGCACTTTTCAGACTTGTTGAACCTGTTGCAGGACAAATATTGATAGATAACATCAACATCTCGTCGATTGGAATCCATGACTTACGGTCGAGACTTAGCATAATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTGAGAAGCAACCTCGACCCGCTGGAAGAGTACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGTCAACTAGGAGATGAAGTGAGGAAGAAAGAAGGAAAGCTTGACTCTACTGTTACTGACAATGGAGAAAATTGGAGCATGGGACAAAGACAGTTGGTCTGCCTCGGCCGTGTTCTACTTAAGAAAAGCAAGATCTTGGTGCTCGACGAAGCTACTGCATCAGTCGATACCGCTACAGATAATCTTATTCAGCTGACAGTAAAACAACATTTCTCTGATTGCACAGTCATTACAATTGCTCATAGAATAACTTCGATTCTTGATAGCGACATGGTTCTGTTTCTCAGTGAAGGGCTTATTGAAGAATATGATTCACCAAAGAAGCTGCTTAAGGACAAATCTTCATCTCTTGCTCAACTAGTTGCAGAATATACAAGGAGGTCAAACACTGGTTTTGGAAGTTGA 3927 0.3967 MTKHDPLEESLLKGEASVSKSNGSYSKETKGNDILTSYSNAGFFSILTFSWMSPLITLGSKKTLDHEHLPLLSTNDTAYGTFSTFRNKLESECGNVRSVTTIKLAKVLFFSTRQGILLSGLFALLFTCASYVGPYLIDNLVQYLNEENKVKKDGYILAIAFIAAKLVECLFMRHWMFKFQQVGVRMQSMLVSMIYAKGLTLSRQSKEGHSSGEIINLLTVDAARIGEFCWYMHDPWMAVLQVSLALFILHRSVGVASIAAFAATVVVMLLNLPVASLQEKFQGKLMEFKDKRMKATSEILMNMRILKLQAWEMKFLSKIIQLRKTEEMWLKKFLVGTAIVRFLFFNAPTFVAVVTFGACVLLGIPLESGKILSALATFRILQMPIYNLPDTISMIAQTKVSLDRVVAFLRLNDLQTDVVEKLPRGSSDIAVEIVDGRFSWDVSCVNNTTLKNINLRVFHGMRVAVCGTVGSGKSSLLSCIIGEIPKISGTLKVCGTKAYVSQSPWIQSGKIEENVLFGREMDREKYERVIEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPDADLILVMKEGRITQSGKYNDILKSGTDFMELVGAHRAALSSVKSLERRISFKTSSITGEDTGSLSDFELEQEVENIDDQNGQLDETVKPKGQLVQEEEREKGRVGFNVFWKYITTAYGGALMPFIFISQILTVVLQIASNFWMALATPVSATTEPDIGSLTLMVVYVSLAIGSSFATLARAFLAIIAGYKTATMLFKQMHLSFIRAPMSFFDSTPSGRILNRASTDQSAIDMTIPNIAWGFTYNVVQLLGNIAVMSQAAWQVFIVLIPVMAACIWYQRYYSASARELARLTGICQAPVIQHFSETISGATTIRSFEQQSRFNEINMKLIDKYSQPKLYSASAMEWLSFRLDILSSTIFAFCLVFLISFPSSIADPSIAGLAVTYGINLNSVQFNLIWFLCNLENKIISVERILQYTSIPSEAPLVIEDNRPDHSWPSFGEVHIQDLQVQYAPHLPLVLRGLTCTFIPGAKTGIVGRTGSEKTTLVQALFRLVEPVAGQILIDNINISSIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKEGKLDSTVTDNGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQLTVKQHFSDCTVITIAHRITSILDSDMVLFLSEGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNTGFGS 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01100 1308 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 1307 - -
Car05g01100 1308 Gene3D - 1045 1298 IPR027417 -
Car05g01100 1308 CDD ABCC_MRP_domain2 1060 1280 - -
Car05g01100 1308 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 431 655 IPR003439 GO:0005524
Car05g01100 1308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1054 1287 IPR027417 -
Car05g01100 1308 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1062 1296 IPR003439 GO:0005524
Car05g01100 1308 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 745 1025 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car05g01100 1308 CDD ABC_6TM_ABCC_D2 743 1037 IPR044726 GO:0140359
Car05g01100 1308 Pfam ABC transporter 450 584 IPR003439 GO:0005524
Car05g01100 1308 Pfam ABC transporter 1080 1227 IPR003439 GO:0005524
Car05g01100 1308 Pfam ABC transporter transmembrane region 745 988 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car05g01100 1308 Pfam ABC transporter transmembrane region 117 384 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car05g01100 1308 SUPERFAMILY ABC transporter transmembrane region 114 409 IPR036640 GO:0005524|GO:0016021
Car05g01100 1308 CDD ABC_6TM_ABCC_D1 118 405 IPR044746 GO:0140359
Car05g01100 1308 MobiDBLite consensus disorder prediction 1 26 - -
Car05g01100 1308 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 5 1307 - -
Car05g01100 1308 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 117 397 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car05g01100 1308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 430 654 IPR027417 -
Car05g01100 1308 SMART AAA_5 1088 1280 IPR003593 -
Car05g01100 1308 SMART AAA_5 459 632 IPR003593 -
Car05g01100 1308 ProSitePatterns ABC transporters family signature. 557 571 IPR017871 GO:0005524
Car05g01100 1308 CDD ABCC_MRP_domain1 431 632 - -
Car05g01100 1308 Gene3D ABC transporter type 1, transmembrane domain 706 1043 IPR036640 GO:0005524|GO:0016021
Car05g01100 1308 Gene3D ABC transporter type 1, transmembrane domain 96 412 IPR036640 GO:0005524|GO:0016021
Car05g01100 1308 Gene3D - 413 675 IPR027417 -
Car05g01100 1308 SUPERFAMILY ABC transporter transmembrane region 741 1044 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01100 Car-Chr5 52762870 52771001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01100 450 855 Calmodulin-binding Proteins AT2G36910 25.951 2.00e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01100 - K05666 gmx:106794105 2084.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01100 05 52762870 52771001 Car05g01100 05 52762870 52771001 ECH
Car02g02117 02 51535033 51541806 Car05g01100 05 52762870 52771001 PCT