Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01097 ATGGATATTTCAGAGTGTACCGGGATTGTTTATGAGAAGATTCTAAGATTTGAGCCAGAACATGCTACAAAGATCATTGGCTATATCCTAATGAAACATCATGGTGAACAAGAGTTAGCTAAATTGGCTTCATCTCCTGATTATTTCATCTATGAAGTGGTCCTTGAGGCTAGAAATGAGCTTCAATTGTTCAATGCTACATCGAAAATGCTTCCGATTCAGCCACCAAGTTATTTGCAGTCTCACACTTCCTATTACCATATGAATTCTGCTAATGATGGAAATACTAATGAAGATCTTATGGGCACATCTTACTTGGATTCTATCGTTGAACTTCATCAGCGTCTCGAATTGCTCCATTCGGTGAATCGTCGTGTGAATTGTCGTGTAGATGGTTTGAATTGTGTGAGAACTAACTTAGAATATGCTTCAGCTGTTTGCAATTTGAATAGAAAAAATGGTGGAAGGTTTTTCAACATGTATGAATATCCATTCAAGACCTGTCATTATTTCAACAAAGGGTTTTGTAAGAATGGAAATTATTGTAAGTACTCCCATCATGGAAATGTTGGTTCTGAGATGTATGGAAATGATGCTGCTTACGATGAACAAGCGATTTCGCCTAGATCATTGGCGCAATTAGAGTCTGAAATCGTCGAGCTTTTGAAACAAAGAGGAAGTCCTATTTCAATTGCTTCACTTCCAATGGCATACTATGATAAGTATAGAAAGGTATTACGTGCAGAAGGTTATCAAGCTGGCTCAGGTAAGTCTGGCATCAATTTAACAAGGCTTCTTGCTCAATTCAGAAATAGTATTCGGCTAATTGACAGGCCTCATGGACAGCATGCAGTTGTTCTCGCCGAAGATGCTTCGAAAATCATGGGAAAGATAGACTGTCAAAACATCAGTGCATCACAACAAATATACTTGACATTTCCTAGGAGGATGTATCAAACTACTTTAGTACTTTTGGCTGTGTTCAAGATGTAA 993 0.3797 MDISECTGIVYEKILRFEPEHATKIIGYILMKHHGEQELAKLASSPDYFIYEVVLEARNELQLFNATSKMLPIQPPSYLQSHTSYYHMNSANDGNTNEDLMGTSYLDSIVELHQRLELLHSVNRRVNCRVDGLNCVRTNLEYASAVCNLNRKNGGRFFNMYEYPFKTCHYFNKGFCKNGNYCKYSHHGNVGSEMYGNDAAYDEQAISPRSLAQLESEIVELLKQRGSPISIASLPMAYYDKYRKVLRAEGYQAGSGKSGINLTRLLAQFRNSIRLIDRPHGQHAVVLAEDASKIMGKIDCQNISASQQIYLTFPRRMYQTTLVLLAVFKM 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01097 330 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 81 - -
Car05g01097 330 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 73 314 - -
Car05g01097 330 ProSiteProfiles Zinc finger C3H1-type profile. 162 189 IPR000571 GO:0046872
Car05g01097 330 Gene3D - 161 229 - -
Car05g01097 330 ProSiteProfiles OST-type HTH domain profile. 210 290 IPR025605 -
Car05g01097 330 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 81 - -
Car05g01097 330 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 73 314 - -
Car05g01097 330 Pfam OST-HTH/LOTUS domain 210 284 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01097 Car-Chr5 52714281 52715457 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car05g01097 OST-HTH 8.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01097 - - gmx:100780955 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01097 05 52714281 52715457 Car05g01097 05 52714281 52715457 ECH
Car05g01097 05 52714281 52715457 Car02g02112 02 51509017 51512891 PCT