Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01094 atggacgccGGCGAACCCCAATTCCGGCGACAAACTCCTGGCAAGATGGAACACGACGATCCAAATCGAACCATGTCACGAACCGATTCTGCTTCCGAAGTTGCTGCCACCAGCGGAGCTAGATACAAGCTGATGTCGCCGGCGAAGCTCCCGATCTCTAGGTCACCGGTTTTGACGATTCCGCCGGGACTCAGTCCGACTTCGTTTCTTGAATCCCCAGTGCTACTCTCAAACATGAAGGTAGAACCTTCACCTACAACAGGTTCCCTTCCTAGGCTTCAACAAACAGCACATGGTTTTGTAACCTCTTCTACGTCTGCTACGTTTCCTGTAACCGCTGTATGCTTCAATTCTAATACTGTTGATGACGGAAAGTCCAGCTTCTTTGAATTTAAACCACACAGTAGATCGAATATGGTTCCTGCCGACTTTAACAACCATGCATGTGAAAAATCTACTCAAATAGATGGTCAAGGAAAAGTTCAATCTTTTGTCTCGACACCATTGGTCAAAAGTGAAATAGCAGTCTCTTCAGATGAAATAAGTCTATCATCACCTCGTCAAATGGTTAGTTCAGGGGCTAGTGCTCATGTTGAAGTCGATTTGGACGAATTAAACCCTAGTGGCAACGTCGCAACTAGGCTTCAAGCATCTCAAGTTGATGGTAGGGGCAGCGGACTTTCAGTTGCTGCTGATAGGGCATCTGATGATGGATACAATTGGCGAAAATATGGGCAGAAGCTTGTTAAAGGGTGTGAATTTCCACGCAGTTATTACAAATGCACACATCCTAACTGTGAAGTGAAGAAACTCTTTGAACGCTCTCATGATGGCCAAATCACTGAGATAGTTTACAAGGGAACACATGATCATCCTAAACCTCAACCGAGCCGTCGATACTCTGGTGGAACTATTATGTCTGTCCATGAAGAGAGATCTGATAAGGCTTCTTTGACTGGCCGTGAAGCTGAGCGTGACAGTACTCCAGATCTATCACCTATAGCAACAAATGATGATAGTCCAGAGGCTGCAGGATTTTTGTCAAACAGGAATATTGATGAGGTTGATGAAGACGATCCGTTCTCAAAGCGAAGCAGAAAAATGGATCTTGACATCACTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAGTATGGGCAGAAGGTAGTAAGAGGCAATCCTAATCCTAGGAGTTATTACAAATGCACAAACGCTGGTTGCCCAGTTAGAAAACACGTGGAGCGGGCGTCTCATGATCCGAAAGCCGTAATAACCACATATGAGGGTAAACACAATCATGATGTACCGACTGCAAGGAATAATAGTCATGACATGGCAGGACCATCAGCTGCAGGTGGACAACATACAAGAATTCGACATGAAGAAAGTGATACTATTAGCCTTGACCTTGGAATGGGCATTAGCCCAACTGCTGAAAATAGAACGAACAGTCAAGGGAGAATGATGCTTAATGAATATGGTGATAACCAAACTCACACCAACAATTCCAGCTTCAAGTTTGTTCATACTACACCGCCTCCGGTATATTATGGTGTACTAAATAACAACTCAAATCCATATGGTTCTAGAGAAAACTCGAATGATAGTTCGTCTTTAAACCATTCTGCTTATCCTTGCCCAACGAACATCGGAAGAATACTAATGGGTCCCTAA 1731 0.4414 MDAGEPQFRRQTPGKMEHDDPNRTMSRTDSASEVAATSGARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTAHGFVTSSTSATFPVTAVCFNSNTVDDGKSSFFEFKPHSRSNMVPADFNNHACEKSTQIDGQGKVQSFVSTPLVKSEIAVSSDEISLSSPRQMVSSGASAHVEVDLDELNPSGNVATRLQASQVDGRGSGLSVAADRASDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRYSGGTIMSVHEERSDKASLTGREAERDSTPDLSPIATNDDSPEAAGFLSNRNIDEVDEDDPFSKRSRKMDLDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSHDMAGPSAAGGQHTRIRHEESDTISLDLGMGISPTAENRTNSQGRMMLNEYGDNQTHTNNSSFKFVHTTPPPVYYGVLNNNSNPYGSRENSNDSSSLNHSAYPCPTNIGRILMGP 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01094 576 SUPERFAMILY WRKY DNA-binding domain 387 455 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car05g01094 576 MobiDBLite consensus disorder prediction 308 328 - -
Car05g01094 576 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 27 556 IPR044810 GO:0003700
Car05g01094 576 SMART WRKY_cls 395 454 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01094 576 SMART WRKY_cls 235 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01094 576 MobiDBLite consensus disorder prediction 450 478 - -
Car05g01094 576 MobiDBLite consensus disorder prediction 1 38 - -
Car05g01094 576 Gene3D WRKY domain 228 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car05g01094 576 Gene3D WRKY domain 380 456 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car05g01094 576 Pfam WRKY DNA -binding domain 396 452 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01094 576 Pfam WRKY DNA -binding domain 236 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01094 576 MobiDBLite consensus disorder prediction 284 362 - -
Car05g01094 576 ProSiteProfiles WRKY domain profile. 230 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01094 576 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 27 556 - -
Car05g01094 576 MobiDBLite consensus disorder prediction 542 562 - -
Car05g01094 576 MobiDBLite consensus disorder prediction 11 26 - -
Car05g01094 576 ProSiteProfiles WRKY domain profile. 390 455 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01094 576 SUPERFAMILY WRKY DNA-binding domain 234 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01094 Car-Chr5 52660198 52667207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01094 45 576 WRKY Transcription Factor Family AT4G26640 56.058 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car05g01094 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01094 - - gmx:100781491 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01094 05 52660198 52667207 Car05g01094 05 52660198 52667207 ECH
Car05g01094 05 52660198 52667207 Car02g02104 02 51462620 51467016 PCT