Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01091 ATGGAATCGGATCTTGGTAAGCTCTTCATTGGAGGAATATCTTGGGACACTGACGAGGAACGTCTCAAAGAGTATTTTGTGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGAGATCGCGCAACAGGCCGTGCTCGTGGTTTTGGTTTCATTGTCTTTGCTGATCCTGCTGTTGCTGAGAGAGTTATTATGGATAAGCATATCATCGATGGCCGCACAGTTGAGGCGAAGAAAGCTGTTCCTAGGGATGATCAGCAGAATGTAAACAGACAGACTGGTAGTGCACATGCATCTCCCGGTGCTGGACGTACAAAGAAGATTTTCGTTGGAGGCTTACCATCAACTATCACTGAAAGTGATTTCAAGATGTATTTTGATCAGTTCGGTACAATTACTGATGTTGTAGTTATGTATGATCACAATACACAAAGGCCAAGAGGTTTTGGCTTCATCACATATGATTCGGAAGAAGCCGTGGATAGAGTTCTTTATAAAACATTCCATGAACTCAATGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCGAAAGAACTTTCGCCTGGTCCCACCCGAAGCCCGTTGATAGGATATAACTATAGTTTGAATAGTAGGGCCAGTAACTACCTAAACAATTATGGTCAAGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTCAGAATGGATGGTAGGTTTAGTCCACTTACTGGTGGTAGATCCGGATTTACCCCTTTCGGCAGCACCAATTATGGAATGGGGATGAACTTGGATTCAGGATTGAGCCCGAGTTTCGGAGGGAACTCTAATTTCGGGAACAATTTAGGGTATGGTCGGATATTTAGTCCTTTTTATAGCGGCAACTCGAGCAGATATGCTACTCCTATAGGCTATAATGGGGGTAATGGGAGAGGTGATTCTCTAATGAACTCGGCTTCTAGGAATGTTTGGGGAAATGGGGGTCTGAGTAATGCCAATAATCCCGTCAGCCCTGGTGCTTTCTTGGGATCTGGAAGTGGAGCATTTGGTGTTTCAATTGGAAATAGCGGCACAAACTGGGGCCCAACGATGCCGGCTCAGGGTGGAGGGGCTGCTTCTGGCTATGCTACCGGTAATAATGTTTATGAAGGTGGAGATAGCGGCTTTGGTTTAGGTGGAGCAGCAGGGTATGGAAGAAACAACAATGCAGTTGTGAATCCATCCTCTGCATTTAATGCCTCGGCTGGTGGTTATGAAGGATCCTATGGGGACTTATACCGCAGTGGCAGCGGTTCTGTTTACAATGACTCTGCTTGGAGATCTGCTGCTTCTGAGATAGATGGTTCTGGCTCGTTTGGTTATGGTCTTGGTGGTATTGCATCGGATGATGCAGTGAAGACTTCTGAGGGTTACATCGGAAGCTACAATGTTGCAAGTAGACAACCTAATAGAGGTATCGCTGCTTAG 1446 0.4544 MESDLGKLFIGGISWDTDEERLKEYFVKYGEVIEAVIMRDRATGRARGFGFIVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQTGSAHASPGAGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGYNYSLNSRASNYLNNYGQGYSMSPIGGYGVRMDGRFSPLTGGRSGFTPFGSTNYGMGMNLDSGLSPSFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIGYNGGNGRGDSLMNSASRNVWGNGGLSNANNPVSPGAFLGSGSGAFGVSIGNSGTNWGPTMPAQGGGAASGYATGNNVYEGGDSGFGLGGAAGYGRNNNAVVNPSSAFNASAGGYEGSYGDLYRSGSGSVYNDSAWRSAASEIDGSGSFGYGLGGIASDDAVKTSEGYIGSYNVASRQPNRGIAA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01091 481 SMART rrm1_1 7 78 IPR000504 GO:0003723
Car05g01091 481 SMART rrm1_1 107 179 IPR000504 GO:0003723
Car05g01091 481 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 481 - -
Car05g01091 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Car05g01091 481 MobiDBLite consensus disorder prediction 78 103 - -
Car05g01091 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Car05g01091 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Car05g01091 481 Gene3D - 105 185 IPR012677 -
Car05g01091 481 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Car05g01091 481 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Car05g01091 481 Gene3D - 6 88 IPR012677 -
Car05g01091 481 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 481 - -
Car05g01091 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Car05g01091 481 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Car05g01091 481 SUPERFAMILY RNA-binding domain, RBD 106 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01091 Car-Chr5 52568834 52573525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01091 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 29.082 1.79e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01091 K14411 - gmx:100794390 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01091 05 52568834 52573525 Car05g01091 05 52568834 52573525 ECH