Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01065 ATGGCATCTTCGGATGATGAATCTGATACGCAGCCACTGTCTGTGTCAAATTACCATTTCGAAGATGACAAAGACGCACCTGTATCTTTTTCCGTTTTACCGATTCGATGGAGCGAGTCTGAGAGTGTCGGCTGCAAGAAAGGTAAGGTGTTTCTTCATGGTAACGCGGATAATGGTTTGCAGAAAATTTTCATGCAAGTCATAGCATGGAGGTTTGATCTTTCCAATGTGAAGCCTGAGATATCAGTGCTATCAAAAGATGGGAGATGGATCAAACTTCAAAAGCCAAGGAAGAGTTATGAGGATACTATAAGGACTATTTTAATAACGGTTTACTTCTTGCATTATTTGAAAAAGAATCCCGACCCATCTGCTAGATCGGTGTGGGATAGCTTGAGTAAGAATAAGGAGTTTAGCTATTATGAGGTAAAGCCTTCGCTAAATGATTTGTCAAACCATATGGGTTTAATGGGGGAAGCTGCTACAAGGGATGCTGTCTTAGCAAAGTCCAAGCTTTTGCTCACTGTTCTGGAAGATAAGGATAGGATGAAGATTAAGAAACTTTCTGAAGAGGAAGTTAAAGAGCTAGCACGGCCCGGGTTTATAATTGATGATACTGACAATGGTACAATTGATGAAACTGTTGAAGAGTCAGATGAAGAGGACGAGTTATTTGATTCTGTTTGTTCCATTTGTGACAATGGTGGTGAACTTTTGTGTTGTGATGGAAAGTGCATGAGGTCATTTCATGCTAATGAGGAGGATGGTGAGGAATCTTCTTGTGTCTCTCTTGGTTTTAGCCGGAAGGAAGTTCAGGATATCCAAAATTTCTATTGTAAGAATTGTGAATATAATCAACACCAGTGTTTTGCATGTGGCGTACTAGGCTGTTCTGATAAATTTACTGGTGCTGAGGTCTTCAAATGTGCTTCTGCAACCTGTGGTTTCTTCTATCATCCACAATGTGTTGCTAAGTTACTTCACCGGGTGGTTGAGAGTGTTCCGATGGAACTAGCAAGAAATATATCTAAGGGGGAACCTTTCACTTGTCCTGCTCACTATTGCTGTATTTGTAAAGAAATGGAAAACAGGCAAGAGCATGAGTTGCAATTTGCTGTTTGTAGGCGTTGTCCCAAGTCATATCATCGCAAATGTTTGCCAAGAAAGATTGCTTTTGAAGACATAGTGGATGAAAACATTGTAACAAGGGCTTGGGAAGATCTTTTACCAAACAATCGCATTCTTATTTATTGCTTAAAGCATGAGATAGATGATGAACTTGGAACTCCAATAAGAGATCATATAAAATTCCCCAATGTTAAAGGTACTGTTCGAGAAATTAATACTGAGGAGAAGATAAAGCCTTCAACCAAAGAAGTTATATCAAACAAGAACAATGGTAATTTACCTATCAAAAGAACTAGTGCTAAGTTGTCTGATAAAATGTCCTACGGAAAAGTTGGCATAAAAAATTCTGGAAAGATTTCTGGATCCAATATCCCTAGAAAGAAAGCAAATGAAGCACCAAGAAGGTATTTGAATGAAAATAAGAGGTCAGTTTCAAAGGAAACTGAAAGGTCTGACTATGAGGAAAATCAGCTCTCACTGGGTGTGCAACTATATGATCTCTACCAGAAGGGTTCTGAGCAAGTTAATTCTGGTAATCAGGTCGATAATGTAGCTGATAACACCCTGTCTATTCAGCGTACTAAAAAGCTGAGCAGTGCAGCACCCCAATTAGACGCAGATTCAGAGAGGAGATTATTGGCTTTGTTTAAAGAAGCTACATCATCGGTTACTCTGGAGAATGTCATAAAAGAACATAAATTTGCTTCTACTCATACTCACTCGCTGAAAAATGTTGTGGAGAAGACTATTACAGCAGGGAAGTTAGAAGGGTCAGTTGAGGCTGTTCGAACAGCTATAAGGATGCTGGAGGACGGACACAGCATTCGGGAAGCAGAAGCTGTTTGTGGTCCCAATGTTCTGAACCAGATATTCAAGTGGAAGGACAAGTTGAAAGTATATCTTGCACCTGTTTTATATGGGAATCGCTACACATCTTATGGTCGCCATTTTACACAAGTGGAAAAGCTGGAAGGGATTGTGGATAAACTCCATTGGTATGTTCAGAATGGTGATACGATTGTGGACTTCTGTTGTGGTGCTAATGATTTTAGCACTCTCATGAAGAAAAAGCTTGAAGAGATGGGGAAGAGATGCTCGTACAAAAACTTTGATTTACTTCCAACAAAGAATGATTTTAATTTTGAGATGAGAGATTGGATGACTGTCCAGCGAAAGGAGTTGCCTTCTGGATCACGTTTGATCATGGGCCTCAATCCCCCCTTTGGGGTTAAAGCAGCTTTGGCTAACAAGTTTATAGACAAGGCTTTAGAGTTTGAGCCTAAGCTCCTGATTCTTATAGTACCACCGGAGACACAGAGGCTGGATAAAAAACGGTCTCCATATAATCTTGTCTGGGAGGATGAGAGGTTTCTATCAGGCAAGTCGTTTTATCTACCTGGATCAGTTGATGCTAATGACAAGCAAATGGAGCAATGGAATGTAAAGCCACCCCCACTCTACCTTTGGAGTCGTCCAGACTGGGCTGATAAACATAAGCAAATAGCCCAGGAGCATGGTCACTTGTTCAGACAGCCCGACGTATCGAAAGTGGTAAGCATTGATAAGGAGAAATCACCATCAAGTCATACTATGGATGAAGACTATGTTGATGATATCATGCTGGACCGTATGCTGGATCGTGATTTCTTGAAGTCAAATAACAATGAAGATTACCCATTTATGGAAAGCAAGCTGAAAGGCATGTCTAGTGGAAACGTTGATCGAGAGAGTCAAGAGAGACAGGAGTATTTGGTGACTAAGGTTGAGAACACCTCATGGAAAAGGAAAGAAAATGATGGTAGAGGACCAGCTGTAATCTCACCAGCTAAGAGGCAAGATATTAGTGAAATTCACAAGGGAGTGCGGCACCATGGTACCTCCAGTCCACTTGATGTTGAGGGATATCAGCCAGATATTGATATGTTGATATCTCCAGATAGAGATGCTGGTGATATTGAGTATACGTCTCTGGAACCTCACTCTTCTGCTGGTGGTGATGGCTATAGGCATGTGGAGCCTCTCCCTTCCTCACTGATGGAATTTGGAGAAGCCTATGATGCACCCCAAAGTTGGCCAAATGTTAGTGACCCCCTTCCTGATTACAGGTTGAAGGATTTACAGGAACACAATAGCAGACTTCTGGGAGACAGCGCAGGCAACCTTAGATATAGACCCTATCCCAGGGAGGATGATAGTTACCTGAGGGAATTAGAGACAAGGAAACAGGTTCACCCTCACGGGCTTCAGCCTCCCGAATCTATGAGTAGTTATCTCTCTGGTCATGATCCTGCTTATAACCAAATAGGATCTACCTATTCAGTACTTGGTTCAGGATCTGAATTGTCTTACATGACGAGTACACCAGCTATGCAACGATATGCACCTCGTCTCGATGACTTAAACCATGTTAGGACAAATTCTTTGGGACCTGAGCGTCCTATAGTTGGTGGAAGTGACGCCTTTGAACGTAGTATACCCCAACCCGGATATGGAAATGTGCAGCCAGGTTTTGCAGCTGGTCCTCCCCAGTTGTATCCACGCCATAATTCTTCAAACTGGTCCAGGGATTAA 3699 0.4171 MASSDDESDTQPLSVSNYHFEDDKDAPVSFSVLPIRWSESESVGCKKGKVFLHGNADNGLQKIFMQVIAWRFDLSNVKPEISVLSKDGRWIKLQKPRKSYEDTIRTILITVYFLHYLKKNPDPSARSVWDSLSKNKEFSYYEVKPSLNDLSNHMGLMGEAATRDAVLAKSKLLLTVLEDKDRMKIKKLSEEEVKELARPGFIIDDTDNGTIDETVEESDEEDELFDSVCSICDNGGELLCCDGKCMRSFHANEEDGEESSCVSLGFSRKEVQDIQNFYCKNCEYNQHQCFACGVLGCSDKFTGAEVFKCASATCGFFYHPQCVAKLLHRVVESVPMELARNISKGEPFTCPAHYCCICKEMENRQEHELQFAVCRRCPKSYHRKCLPRKIAFEDIVDENIVTRAWEDLLPNNRILIYCLKHEIDDELGTPIRDHIKFPNVKGTVREINTEEKIKPSTKEVISNKNNGNLPIKRTSAKLSDKMSYGKVGIKNSGKISGSNIPRKKANEAPRRYLNENKRSVSKETERSDYEENQLSLGVQLYDLYQKGSEQVNSGNQVDNVADNTLSIQRTKKLSSAAPQLDADSERRLLALFKEATSSVTLENVIKEHKFASTHTHSLKNVVEKTITAGKLEGSVEAVRTAIRMLEDGHSIREAEAVCGPNVLNQIFKWKDKLKVYLAPVLYGNRYTSYGRHFTQVEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSTLMKKKLEEMGKRCSYKNFDLLPTKNDFNFEMRDWMTVQRKELPSGSRLIMGLNPPFGVKAALANKFIDKALEFEPKLLILIVPPETQRLDKKRSPYNLVWEDERFLSGKSFYLPGSVDANDKQMEQWNVKPPPLYLWSRPDWADKHKQIAQEHGHLFRQPDVSKVVSIDKEKSPSSHTMDEDYVDDIMLDRMLDRDFLKSNNNEDYPFMESKLKGMSSGNVDRESQERQEYLVTKVENTSWKRKENDGRGPAVISPAKRQDISEIHKGVRHHGTSSPLDVEGYQPDIDMLISPDRDAGDIEYTSLEPHSSAGGDGYRHVEPLPSSLMEFGEAYDAPQSWPNVSDPLPDYRLKDLQEHNSRLLGDSAGNLRYRPYPREDDSYLRELETRKQVHPHGLQPPESMSSYLSGHDPAYNQIGSTYSVLGSGSELSYMTSTPAMQRYAPRLDDLNHVRTNSLGPERPIVGGSDAFERSIPQPGYGNVQPGFAAGPPQLYPRHNSSNWSRD 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01065 1232 Pfam Cytosine specific DNA methyltransferase replication foci domain 14 132 IPR022702 -
Car05g01065 1232 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1 1227 - -
Car05g01065 1232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 286 IPR013083 -
Car05g01065 1232 CDD PHD2_NSD 288 353 - -
Car05g01065 1232 MobiDBLite consensus disorder prediction 1181 1232 - -
Car05g01065 1232 MobiDBLite consensus disorder prediction 504 530 - -
Car05g01065 1232 MobiDBLite consensus disorder prediction 1117 1137 - -
Car05g01065 1232 MobiDBLite consensus disorder prediction 493 531 - -
Car05g01065 1232 CDD PHD_SF 354 386 - -
Car05g01065 1232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 405 IPR013083 -
Car05g01065 1232 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 1227 - -
Car05g01065 1232 SMART PHD_3 288 354 IPR001965 -
Car05g01065 1232 SMART PHD_3 355 422 IPR001965 -
Car05g01065 1232 SMART PHD_3 228 283 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01065 Car-Chr5 52174697 52187471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01065 217 329 PHD Transcription Factor Family AT3G14980 30.088 3.27e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01065 - - mtr:MTR_3g055370 1864.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01065 05 52174697 52187471 Car05g01065 05 52174697 52187471 ECH
Car05g01065 05 52174697 52187471 Car02g02085 02 51226700 51232493 PCT