Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01056 ATGCAAGTGGGGCTTACGTTAAATTTAAGGAACCAAGAAGGAACTCTTAAGTTGAGTCTCTTAGATCATGGATGCTATGTTGGAGATGTATCCATTAAGTTGGATGGTGGTGCAGCTTGGCTTTACCAATTGTTAGTAGATGCTTTTGAAGGGAATATAGCATCTTCGGTAGAAGAAGCCATTTCAGAGAAAATAACAGAAGGGATATCAAATCTTGATAATTTTTTGCAAACTCTTCCAAACCAAATCTCACTAGACAAAACTGCTGCACTAAATGTTTCTTTTGTGGGCAATCCTGTGTTGACTAATTCCTCTATTGCAATTGCAATTAATGGTTTATTCACAAGAACAAGTGAAATTTTAGTGCCTCAAAGTTACAAGAAAGGATATGAGGTTTCTTCTGCTTGTGGTGGTTTACCAAAGATGATAAAGGTTTCGATACACGAAAATGTGTTCAAATCAGCTTCCCTAGTTTACTTCAATGCAGGTAAAATGCAATTGATTATCGATGAACTGCCCGATCAGGCTCTTCTGAACACTGCTGAATGGAGACTCATTATTCCTCAATTATACAAGCGATATCCAAACGATGACATGCAGATTAATATCTCTGTATCTTCTCCACCAGTTATACAAGTGACCTACCAAGGTATTGGTGCTACTGTTTCTGTAGATATAACAATTGATGTTCTACAAGGCGGTGAAGTCATACCTGTTGCATGTATCTCAGTGGATGTTAGTGCTTCATGTGCTGTGGAAATTTCAGGAAACAATATTGCCGGTAGGCTTACGTTACAAGAATTTTCCGCATACTTAAAATGGAGCAAAATTGGTAAACTGCACATACGTCTTATTCAGTCACTGATATCAAGTGTCCTCAAAACAGTTGTTCTACCATACTTGAACCTCCAACTAAAGAGGGGACTCCCATTGCCAATTATTGATGGTTTTGGATTTCAGAATACTGTTATCTTGTACAATCATCCATGGATTTCAGTGTGTAGTGATGTTTGGTTTATAGAAGAAGACTACTATCTTATTCAACATTCAACTTATCTATCATAA 1065 0.3718 MQVGLTLNLRNQEGTLKLSLLDHGCYVGDVSIKLDGGAAWLYQLLVDAFEGNIASSVEEAISEKITEGISNLDNFLQTLPNQISLDKTAALNVSFVGNPVLTNSSIAIAINGLFTRTSEILVPQSYKKGYEVSSACGGLPKMIKVSIHENVFKSASLVYFNAGKMQLIIDELPDQALLNTAEWRLIIPQLYKRYPNDDMQINISVSSPPVIQVTYQGIGATVSVDITIDVLQGGEVIPVACISVDVSASCAVEISGNNIAGRLTLQEFSAYLKWSKIGKLHIRLIQSLISSVLKTVVLPYLNLQLKRGLPLPIIDGFGFQNTVILYNHPWISVCSDVWFIEEDYYLIQHSTYLS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01056 354 Pfam LBP / BPI / CETP family, N-terminal domain 4 72 IPR017942 GO:0008289
Car05g01056 354 Pfam LBP / BPI / CETP family, C-terminal domain 141 324 IPR001124 GO:0008289
Car05g01056 354 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 134 338 IPR017943 GO:0008289
Car05g01056 354 Gene3D - 78 326 - -
Car05g01056 354 Gene3D - 1 77 - -
Car05g01056 354 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 1 354 - -
Car05g01056 354 SMART bpi2_2 137 342 IPR001124 GO:0008289
Car05g01056 354 PANTHER OS06G0309200 PROTEIN 1 354 IPR045897 -
Car05g01056 354 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 6 103 IPR017943 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01056 Car-Chr5 52063277 52069682 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01056 05 52063277 52069682 Car05g01056 05 52063277 52069682 ECH
Car05g01056 05 52063277 52069682 Car02g02080 02 51201163 51208249 PCT