Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01047 ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAACCAGCTTGAACTTCAATTGCAAGAACAAAGGGATTCTCTCGCTGCTATCGATCATGCTCTCCTCCTTGATCCAACAAATTCCGAACTTCTCTCGGTTCATGAGGAGCTTGTTCAGGTAATTAAGGATGCTGAGGAAGGACTTCTTCACCTAAAGCGTGCAAGATTATTATCTGAAGCAGACACAGTGCTGCATAGTACTAATATTTTTTCGGAAGAGAAAGTGGAGCCACTTGATCCTGCAGATGTTGAACCAGATCCGCCAGAGGAAAAATGCTTTTCTGTTGGATCTAAATGTAGATTCCGTTACAAAAATGGGTGTTGGTACAATGGTCAAGTGGTGCAATTGGATAATTCAATGGCAAAGATTTCATTTCTTACTCCTACATCTGAGAATATGATGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCCCATGGAGTTGATGTTCAACTGTCCTCCCTTAAGGAATATGTCCCGACAATCTGGAAGTCGTCCCTTGTGGGATCAAGTATATGGGCCGTCTCAAATGCAAATGCAGGGATTTGGAGAGAAGCTGAGCTTGAGTCATGGGACGAAAAAGATGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCTGTGAAGCTTGGTGCACAAGAAATGGTATTATCTGAGTATGCAGATATGAGTGACATAGATAGTGATTTCAGCTTAGAACAATCCGATTACAGCGACTCCGAGGAAGAGGAACCACAAGGTTTAGGATTTATGGACAGTACCAACTTACAGAGAGGTGTTCAAACTGAAACTGCTATATTTGCAAAGTGGGAGAACCACACAAGAGGCATAGCATCCAAAATGATGGCTAATATGGGTTATCGAGAAGGGACAGGTTTAGGTATAACTGGTCAGGGTATGCTTGATCCGATACCAGTGAAGGTCCTACCGCCAAAGCAGTCCTTAGATCACGCACTTGGATCTCATAAAGTGGAAGAGAACACAGAGAAGCAAAGGAAGAAACGGACCAGAGGTGGTAGGAGAAAACGCGAGAAGAAATTTGCGGAAGCAAATCGTGCCGCAAAAGAAGAAGAAGAATCGGCACCAGATGTATTCACACTAATAAACAACCAGCTAGCAATGCATGGTGAAGCTTCCCATGATGGATCAACAAAGAAGCAGCAAACTAAAGGTTCAGGGGAAGGTAAAAAGGTGGATAGGAAGGTATTGGTTGCTTATGAGCATGAGGTGAAGGATTTGAAGGCGCAGGTTGAAAAACTTGAACAAATGGTGGAAGCAAATAAAAAAGAAAAGCCTGTCTATGATGCTGCCATGAAAAAATTAGTCCAAACCCGCAAGGCTTTGGCTGATGCTGAAGCAGTTCATGCCTCTGCCTCAAACACAGTTGTTAGCAAAGAAAAAGAGAAGAGGTGGCTTAAGTTTTAG 1482 0.4298 MGSEEERVLENQLELQLQEQRDSLAAIDHALLLDPTNSELLSVHEELVQVIKDAEEGLLHLKRARLLSEADTVLHSTNIFSEEKVEPLDPADVEPDPPEEKCFSVGSKCRFRYKNGCWYNGQVVQLDNSMAKISFLTPTSENMMMCKFFLQQRCRFGSNCRLSHGVDVQLSSLKEYVPTIWKSSLVGSSIWAVSNANAGIWREAELESWDEKDGVGQVVFRDDGSSVKLGAQEMVLSEYADMSDIDSDFSLEQSDYSDSEEEEPQGLGFMDSTNLQRGVQTETAIFAKWENHTRGIASKMMANMGYREGTGLGITGQGMLDPIPVKVLPPKQSLDHALGSHKVEENTEKQRKKRTRGGRRKREKKFAEANRAAKEEEESAPDVFTLINNQLAMHGEASHDGSTKKQQTKGSGEGKKVDRKVLVAYEHEVKDLKAQVEKLEQMVEANKKEKPVYDAAMKKLVQTRKALADAEAVHASASNTVVSKEKEKRWLKF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01047 493 Coils Coil 422 449 - -
Car05g01047 493 Coils Coil 359 379 - -
Car05g01047 493 Pfam G-patch domain 293 335 IPR000467 GO:0003676
Car05g01047 493 MobiDBLite consensus disorder prediction 336 380 - -
Car05g01047 493 Pfam CCCH-type zinc finger 145 165 IPR041367 -
Car05g01047 493 MobiDBLite consensus disorder prediction 251 265 - -
Car05g01047 493 ProSiteProfiles Zinc finger C3H1-type profile. 140 167 IPR000571 GO:0046872
Car05g01047 493 SMART G-patch_5 291 337 IPR000467 GO:0003676
Car05g01047 493 SUPERFAMILY CCCH zinc finger 141 165 IPR036855 GO:0046872
Car05g01047 493 MobiDBLite consensus disorder prediction 337 352 - -
Car05g01047 493 MobiDBLite consensus disorder prediction 395 415 - -
Car05g01047 493 MobiDBLite consensus disorder prediction 362 380 - -
Car05g01047 493 SMART c3hfinal6 140 166 IPR000571 GO:0046872
Car05g01047 493 ProSiteProfiles G-patch domain profile. 293 339 IPR000467 GO:0003676
Car05g01047 493 MobiDBLite consensus disorder prediction 251 271 - -
Car05g01047 493 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 493 - -
Car05g01047 493 Gene3D - 100 177 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car05g01047 G-patch 1.7e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01047 - - gmx:100796284 728.398