Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01042 ATGGAGGAAGATGATAAATCAAATAAACAGTCTCAATCCCCAATGGCTTTCCCTCCTTACCGTCGATCTCACTTCCGTAGTCAAACTTACCATACCCTTGTCCGTATCCTATCCCACCTCCCTCCTTCAACTATTCCAACTCAATCACTCAATGTTCCTGATAATGACATTGGTGGATTGGGGCTAGAAAACAAGGAAAAGGAGCCCGCGAGCTCTGAGATAAATGTTGGTTCGAATGTTATGGATCCCAAGGGTTCTGTATCCATGAATGAAACACATGATGTCCATGAGACCGTTGAAAGTGTTGAAGACATGATCAAGAATTTTAGTGTCCATGATATGATCCTAGATGATATAGAGTTTCTGATGGAAAGAGATGAACCGTCTGAGCAAATAAATGGTTTTCATTCGGAACAGACACTAATGAACGAGTTGGAGCTGGTTGTGAAAGAGACCGGAGATCCTGTTCGTGGTAATGGTTTAATCCTGTTGAACTCGGGATTAAAAGAGAAACAGAATAGTGGTAGTGAAGTTGATTTGATGGATTACCAAGTAGAGCATGTTGAACTTCTGCATTCTGGTACTAGCACATCTGGAAGTGTAAGGGAGCTGCAATCGCAAGTACCGGGAGAGTTTAATCAACTTGCCTCAGAAGAATGTCTTGTGTCCGGATCAACAAAGGGACAAGCTTCTGCTTCAGTAATTAGTACATCGAGTTTAAAGAACAAAACTCAACAAAAGGAAACCGAATTGGTGAAACCAGTTTGTTCCGTAGTAGGCTCTCTTTCTACTATTCAAGAAGGTGATTTTGAGAAGGAAGAACAAAATGGTCATAAGCTTGCTGAACCAACTCATATTTCTTTAGATCTGGATAAGAACATTGAAGCATCAAATATGACTGAAGATGGTGGATTATTGGATTCTACAGTAATAAAAGATAAATCCGTAACACAGAGTGGAGAGAAATCAGAGAAGATAATTTCTGTGAACAATGAAACTCATGATTCCAATATTCTGATTGAAGAAGGAGGTCTAGAAGAGGGAGAAATTTCTGGAGACTTTGAAATGGATGGAAACACATTTGATGTGTCTTCTGCAGATGCTACAGTTGCAGAACAGATGAAAGTGGATGAGGTTCAATTAGCAATCTCCAGGGAAGACAGACACGTAGGAAGTAAAGTTATCAATGACATACCAACAACTTTAACCCAAAATCAAGTCTTGCACAATGGATTCTTGGAAGAAACTGCTACCAAAGATCGTGAGAACTCGTCTCCAGTACAGCAGATAATTGATGCTAGCAAAAAGAAAAGAAGTGGTCCTGACTCTAAGAAGCAGAAAAACAATAAGCAGATGGTTGACTCCAGTAGAAGTAAACGTGGTCCTGGTTCTAAGGAGAAGAAAACTAAAAAGAGGAAGAAATATCGAAAAAACAGAGCAGAAAAGAACAGAGAACTAGGCGTTAAAAGATTGAAGTTGATTCCAGTACAGAAACCAAAAACAATCCAATATTGTCGCCATTATATGAATGGAAGGTGCCATGAGGGTGACAAGTGCAATTTCTCACACGATACCGTTCCTTCAACAAAGTCCACGCCATGCACTCACTTTGCTCGCCACTCTTGCATGAAAGGGGATGATTGCCCATTTGATCATAATCTCTCCAAGTATCCTTGTTCCAATTTTTTGTCTAAAGGCTCTTGTTATAGAGGTGATGCTTGTTTGTTTTCACACCAGGTACCGATCAACCAAGATATACCTACGCCTTCAAATGCTTGCAAACCAGAGTTGAAGTCTCCGCTTCCGTTAGGACATACAAATTTCAGTACGCCATTGAACAATCATGGCTGTAATTCTGTCCAGCAAAATCGCTTCACCAATTCTAAGGGAGTCGATTCTCAAATCAATGCAGAACATAAGGTGACAGACACTTCACAGAAACAGCCTACCTCAGCACCCAAAGGAATTAGGTTCATAAATGTTGCTAACTTATCACCGAGCCTTAGTACGCCAAAACAAGACACGGTAACACCAAGCAAGGGAAGTCTTGTCCGCAATGGAACATGTACAGATAAAGGTCAAAATATTCCGGAAATTCCTAAGAAATTGCCGTCTGTCACACCTAAGGGAATTAACTTTCTTTCTTTCGGCAAAAGTTCCGTTTGCAGTTTTAAAAGTTCTATCGGCTCCCATGTAAATAAGGAAAATGGTATCAAGTTGCCTCAATCAGTCAATTTTGGTTTGCCTGAACATTCAATTTCATTTCTGAATAAGGATGATTATGGCAAAGTTAGTGACAGAACAGCACAAAATTTACCACAAACTGCTCTATTCCCACCTGAGATTTTAGACAAAAACCAATCCATGGCAGAAATAATGAAATCGAAATTTCTAGGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGAAAGATTCAACAGATGATTCCGCAAGGGATCGCGGCCATTGGAAATCAGTTCAAGAGGTAAAAAAAGCATCTGAGAACTCTCAGGCTTCAACTGTGACCTCAGCTATGCTTCTGGCGCGTCCAGTTGTCTCACATCAGTCTTCAGAATGCCAAAGGGCGCTCTTATCAACTTTAGCTTTTGCAACGGAGCATGAATCAGATATAAAGATGAAATGCCCTACCGGTGCTTCACCTGTATGA 2790 0.3835 MEEDDKSNKQSQSPMAFPPYRRSHFRSQTYHTLVRILSHLPPSTIPTQSLNVPDNDIGGLGLENKEKEPASSEINVGSNVMDPKGSVSMNETHDVHETVESVEDMIKNFSVHDMILDDIEFLMERDEPSEQINGFHSEQTLMNELELVVKETGDPVRGNGLILLNSGLKEKQNSGSEVDLMDYQVEHVELLHSGTSTSGSVRELQSQVPGEFNQLASEECLVSGSTKGQASASVISTSSLKNKTQQKETELVKPVCSVVGSLSTIQEGDFEKEEQNGHKLAEPTHISLDLDKNIEASNMTEDGGLLDSTVIKDKSVTQSGEKSEKIISVNNETHDSNILIEEGGLEEGEISGDFEMDGNTFDVSSADATVAEQMKVDEVQLAISREDRHVGSKVINDIPTTLTQNQVLHNGFLEETATKDRENSSPVQQIIDASKKKRSGPDSKKQKNNKQMVDSSRSKRGPGSKEKKTKKRKKYRKNRAEKNRELGVKRLKLIPVQKPKTIQYCRHYMNGRCHEGDKCNFSHDTVPSTKSTPCTHFARHSCMKGDDCPFDHNLSKYPCSNFLSKGSCYRGDACLFSHQVPINQDIPTPSNACKPELKSPLPLGHTNFSTPLNNHGCNSVQQNRFTNSKGVDSQINAEHKVTDTSQKQPTSAPKGIRFINVANLSPSLSTPKQDTVTPSKGSLVRNGTCTDKGQNIPEIPKKLPSVTPKGINFLSFGKSSVCSFKSSIGSHVNKENGIKLPQSVNFGLPEHSISFLNKDDYGKVSDRTAQNLPQTALFPPEILDKNQSMAEIMKSKFLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKDSTDDSARDRGHWKSVQEVKKASENSQASTVTSAMLLARPVVSHQSSECQRALLSTLAFATEHESDIKMKCPTGASPV 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01042 929 MobiDBLite consensus disorder prediction 413 485 - -
Car05g01042 929 SMART c3hfinal6 528 554 IPR000571 GO:0046872
Car05g01042 929 SMART c3hfinal6 556 580 IPR000571 GO:0046872
Car05g01042 929 SMART c3hfinal6 500 525 IPR000571 GO:0046872
Car05g01042 929 MobiDBLite consensus disorder prediction 667 693 - -
Car05g01042 929 Gene3D - 530 592 - -
Car05g01042 929 ProSiteProfiles Zinc finger C3H1-type profile. 528 555 IPR000571 GO:0046872
Car05g01042 929 Gene3D - 469 529 - -
Car05g01042 929 SUPERFAMILY CCCH zinc finger 499 524 IPR036855 GO:0046872
Car05g01042 929 Coils Coil 465 485 - -
Car05g01042 929 MobiDBLite consensus disorder prediction 843 864 - -
Car05g01042 929 MobiDBLite consensus disorder prediction 435 462 - -
Car05g01042 929 SUPERFAMILY CCCH zinc finger 557 579 IPR036855 GO:0046872
Car05g01042 929 Pfam CCCH-type zinc finger 505 524 IPR041367 -
Car05g01042 929 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 304 927 IPR045124 GO:0003723|GO:0045892
Car05g01042 929 PANTHER PROTEIN SUPPRESSOR OF SABLE 304 927 - -
Car05g01042 929 MobiDBLite consensus disorder prediction 667 703 - -
Car05g01042 929 MobiDBLite consensus disorder prediction 1 22 - -
Car05g01042 929 MobiDBLite consensus disorder prediction 41 89 - -
Car05g01042 929 MobiDBLite consensus disorder prediction 71 86 - -
Car05g01042 929 ProSiteProfiles Zinc finger C3H1-type profile. 558 581 IPR000571 GO:0046872
Car05g01042 929 ProSiteProfiles Zinc finger C3H1-type profile. 499 526 IPR000571 GO:0046872
Car05g01042 929 MobiDBLite consensus disorder prediction 463 479 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car05g01042 zf-CCCH_4 1.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01042 - - cam:101495956 1689.09