Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01041 ATGGAAGAAACTATTTGCAATGATGCCATAGGAAACTCAAGTGAAGGGTCACATTCTCCTTCTCAAGTCATTATGATGTCGTTTAATGGAAAAAGACTGATCGTTGATGAGTTGGATTTCTTTGCTGAGGAGAAATTGAGTCCAGATAATCACCAAATGTTGCACCAAATGGAGGAGGAGCATTACGTAGATACTAGTTTAGATCTTTTCACAAAGATTTCTCCTAGCAACAAATCAACAATGGAAGATGAAGAATTGGGTGCTACGACGAATAACAAAAAGGAGTTTGATGCTTTGATGGGTGAATTGCACCAAATGCATGCTGAAAATCAACGTTTGAGAGAGCTGGTTGATAGGATTAATAATGGAGCAAAAGAAGAAAAGGGTAAGAATGTGATTTCAATGCCATTCTTGGAAATGAATTTTGACAAGGAAGAGACTTCACAACAATCTCCAAAGGGAAAAGAAATTAGAGAGAAAAGAAACATGGTTGACTTGATGGAGTGTGATAATCAAAAGACAAAAAAGATTTGTGGTAGTGGAGATATTGTTCATAAGTTGGAACCACAAAAGAAGATGGATAATGAAATCTCACCTACTAATAACAATGGATTTCCAGGGTGGCTCACAAACCAAGTTCCAAGGTTCAATTCTTTTAAGAGTGTTGATGATAAAGCATCGGAATCAATGATCAAGAAAGCTCGTGTGTCAGTTAGAACAAGATCAGAAGCTACTATGATTTCAGATGGATGTCAATGGAGAAAGTATGGACAGAAGATGGCAAAAGGAAATCCATCTCCAAGAGCTTATTATCGTTGTACAATGGGACTTAATTGTCTAGTTCGGAAGCAAGTACAAAGGTGTGCTGAAGATAGAAGTGTGTTGGTAACAACATATGAAGGACAACACAACCATGCTCTGCCTCCAACAGCCAAAGCAATGGCATCAACAACATCAGCAGCAGCATCAATGCTTCTTTCAGGATCAATGCCAAGTGCAGATGGTTACATAAATCCAGCAATATTAGAAAGTGCAGGATTCCCTTGCTCACACAGCATGGCAACACTCTCTGCTTCAGCTCCATTTCCAACTATCACATTAGATCTCACTAAAAAACCTACAACTTCACCCTTTTATGATCACAATTGTATGTCAACTCCAAACATTTTTGGTTCTCAAATAATGGAACCAGCTACTTTTGCTGAAACAGTGAGTGCAGCTACAGCTGCTGTGACTTCTGACCCTAAATTCACAGCTGCTCTTGTGGCTGCCATTACTTCAATGATTGGAAGTTCACATCCAAATAATAATGGTGCCAATGGTACAAATGGAGACCAACAATCCAATAATACAACTTAA 1359 0.3856 MEETICNDAIGNSSEGSHSPSQVIMMSFNGKRLIVDELDFFAEEKLSPDNHQMLHQMEEEHYVDTSLDLFTKISPSNKSTMEDEELGATTNNKKEFDALMGELHQMHAENQRLRELVDRINNGAKEEKGKNVISMPFLEMNFDKEETSQQSPKGKEIREKRNMVDLMECDNQKTKKICGSGDIVHKLEPQKKMDNEISPTNNNGFPGWLTNQVPRFNSFKSVDDKASESMIKKARVSVRTRSEATMISDGCQWRKYGQKMAKGNPSPRAYYRCTMGLNCLVRKQVQRCAEDRSVLVTTYEGQHNHALPPTAKAMASTTSAAASMLLSGSMPSADGYINPAILESAGFPCSHSMATLSASAPFPTITLDLTKKPTTSPFYDHNCMSTPNIFGSQIMEPATFAETVSAATAAVTSDPKFTAALVAAITSMIGSSHPNNNGANGTNGDQQSNNTT 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01041 452 Gene3D WRKY domain 232 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car05g01041 452 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 19 123 IPR044810 GO:0003700
Car05g01041 452 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 127 437 IPR044810 GO:0003700
Car05g01041 452 MobiDBLite consensus disorder prediction 7 21 - -
Car05g01041 452 ProSiteProfiles WRKY domain profile. 242 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01041 452 MobiDBLite consensus disorder prediction 1 21 - -
Car05g01041 452 MobiDBLite consensus disorder prediction 431 452 - -
Car05g01041 452 SUPERFAMILY WRKY DNA-binding domain 239 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car05g01041 452 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01041 452 Pfam WRKY DNA -binding domain 249 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car05g01041 452 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 19 123 - -
Car05g01041 452 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 127 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01041 Car-Chr5 51556764 51574706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01041 207 429 WRKY Transcription Factor Family AT4G04450 52.985 1.26e-78 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car05g01041 WRKY 2.1e-23 CL0274