Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01025 ATGTCACAAAGTTGGACAGACCTGGGTGGGGATCTCTACTCGAATAGAAGGCGCGAACTCATCGATGCTATGACAGCCCTTCCTTGCCTAACCGCTGCTGTTTTCTCAGGTCGAGTTGAGGGCTTGAGCTTCTATGATTCCTGTCAAGTTTTCACTGACGTAGTTGGCAGCCCATACTATGTTGCTCCCGAGGTTCTCCTCAAGCATTATGGGCCTGAAGCAGATGTTTGGACCGCCGGTGTCATACTTTATATATTGCTCAGTGGTGTACCACCGTTTTGGGCAGATCCATGGCCTCTAATATCTGATAGTGGAAAAGATCTGATTAGAAAGATGTTGTGTTCTCAGCCTTCAGATCGGTTGACTGCTCATCAAGTCTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCCCCTGACAGATCATTGGACCCTACTGTTCTTTCTCGTCTCAAACAGTTTTCTGCAATGAATAAGCTAAAGAAGATGGCATTGCGGGTAATTGCCGAAAGTCTATCTGAAGAGGAAATTGCTGGTTTGAGAGAAATGTTCCAGACTATGGATACTGATAACAGTGGTGCAATCACTTTTGATGAACTCAAAGCTGGTCTAAGAAGATATGGGTCTACCCTTAAGGATACAGAAATACGCGATCTTATGGAAGCGGTAGGGTGTTAG 678 0.4499 MSQSWTDLGGDLYSNRRRELIDAMTALPCLTAAVFSGRVEGLSFYDSCQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWADPWPLISDSGKDLIRKMLCSQPSDRLTAHQVLCHPWICENGVAPDRSLDPTVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQTMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMEAVGC 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01025 225 SUPERFAMILY EF-hand 160 223 IPR011992 -
Car05g01025 225 PANTHER SERINE/THREONINE-PROTEIN KINASE 95 223 - -
Car05g01025 225 PANTHER SERINE/THREONINE-PROTEIN KINASE 42 95 - -
Car05g01025 225 Gene3D - 140 224 - -
Car05g01025 225 Pfam Protein kinase domain 46 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01025 225 CDD EFh 180 223 IPR002048 GO:0005509
Car05g01025 225 Pfam EF hand 180 206 IPR002048 GO:0005509
Car05g01025 225 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 4 95 223 - -
Car05g01025 225 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 4 42 95 - -
Car05g01025 225 Gene3D Transferase(Phosphotransferase) domain 1 35 136 - -
Car05g01025 225 ProSiteProfiles Protein kinase domain profile. 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01025 225 SMART efh_1 179 207 IPR002048 GO:0005509
Car05g01025 225 SUPERFAMILY Protein kinase-like (PK-like) 47 157 IPR011009 -
Car05g01025 225 ProSiteProfiles EF-hand calcium-binding domain profile. 175 210 IPR002048 GO:0005509
Car05g01025 225 ProSitePatterns EF-hand calcium-binding domain. 188 200 IPR018247 -
Car05g01025 225 SMART serkin_6 5 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01025 Car-Chr5 51126599 51128571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01025 41 222 EF-hand Containing Proteins AT4G38230 80.693 2.87e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Car05g01025 Pkinase 1.3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01025 K13412 - gmx:100778173 338.191