Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00992 ATGGAACATATGACAAATATGGTTGATGGATTAAATGATGAAAATGGGTTGTTTGGAATGATGGAAAGAAACggaggcggcggtggcggaggaggaggaggaggagaagagatgagTTTAAAGAAAGGTCCATGGACAACACAAGAGGATGCAATTTTAATAGATTATGTGACAAAACAAGGTGAAGGAAATTGGAATGCAGTGCAAAGGAATACAGGTTTGAATCGTTGTGGGAAAAGTTGTAGGCTTAGATGGGCTAATCATTTAAGGCCCAATTTGAAAAAAGGTGCATTTTCTTCTGAAGAAGAGAAACTCATTGTTGAACTTCATGCTCAATTTGGCAACAAATGGGCAAGAATGGCTGCTTTGTTACCTGGAAGAACGGATAATGAAATAAAGAACTACTGGAACACAAGGATCAAACGTCGTCAAAGACAAGGTCTTCCTCTTTATTCAGATGACCATGATCATTcaacaacaccaaccacaccaacaacaCCTTCACCATGTGTCACCCCAACAGGATCAAACCCTAACATCAACACTACTCCAAAGTTTGAATTTTTCcatcaaaaccaccatcaatatcaacaacaacaacaacaacatcaccaCCCTTTATCTCCAACACAACACCATCATTATTCTCCTCTCTCTTCACCACTCCAACATAGacaacaacaacaacaacaacatcaacaacaTTCTTATTCTCCTCACACATTTTTGGACACTTCACCTACACCATTGTCATCTTCTACACCTTCTTCTCTCTCCTTCACTTTCCAAAGACCTGCACCACTCTTAAACAACCCACTCTGCTTCAAACGATACCGTTCGTCTCCGAACTTCAACCTTCAACAACTTCATTCAATCACACCAAATTGCTCCTCTTCACTCCATGATCCTTCTTTAAACTCGCATCACGATCATAATGGTTTCAGGTTCCCAGTTCAATATAACTCAAGTTTTTCTCAGTATTTTCAAACTCCTTTGTTAGAATCCGATCGAGGGGTttcttcttcttcatcgtcttcgcctttttcAACAAAGTTGGAGCTTCCATCAAATCATTATTCAAGAACGCATTTAGACCATGATATTAAGCATCATAATATTGAGTTCAATAATGACACTTCTTTTCAAAACAATAGTGGCTTGTTTGGAGATCTTTTAATGGAAGCACAAACAATGGCATGTGGACAAAATTCAAAGAAAAGAAGTTACTTGAGCTTAAATGAAGGAAATGATATGTTTAATGGATGTCAAAGCATAGATGATTACCCACTTAGCTCTCTTTATTGGTCTTCTAATTCAGGACAAAAAGCAAAGGAAGAAGCACCAGACCTAAACAAATTCATGAATGATGAGATGTCAACAATGTTAAGTGTGATGCCTTCTTCAACAATGCAAAGTCAAGATTGGAATACTGATAATAACAACAACAATAATAGTGCATCAGATGTCTCCAATGTTCAATCTTCAAGTGGTGTGATGACAGAAGAAAATTTTGGACTTGATATCAAGCCTATAGCTTCATTGTTTCCTCTCACAAACACAACAAACCATAATAGTAATAATGAAAACAATGAATTCTACACTTGGGACAATTTACCTGGACTATGCTAG 1629 0.329 MEHMTNMVDGLNDENGLFGMMERNGGGGGGGGGGGEEMSLKKGPWTTQEDAILIDYVTKQGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSSEEEKLIVELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDDHDHSTTPTTPTTPSPCVTPTGSNPNINTTPKFEFFHQNHHQYQQQQQQHHHPLSPTQHHHYSPLSSPLQHRQQQQQQHQQHSYSPHTFLDTSPTPLSSSTPSSLSFTFQRPAPLLNNPLCFKRYRSSPNFNLQQLHSITPNCSSSLHDPSLNSHHDHNGFRFPVQYNSSFSQYFQTPLLESDRGVSSSSSSSPFSTKLELPSNHYSRTHLDHDIKHHNIEFNNDTSFQNNSGLFGDLLMEAQTMACGQNSKKRSYLSLNEGNDMFNGCQSIDDYPLSSLYWSSNSGQKAKEEAPDLNKFMNDEMSTMLSVMPSSTMQSQDWNTDNNNNNNSASDVSNVQSSSGVMTEENFGLDIKPIASLFPLTNTTNHNSNNENNEFYTWDNLPGLC 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00992 542 CDD SANT 44 89 IPR001005 -
Car05g00992 542 MobiDBLite consensus disorder prediction 149 259 - -
Car05g00992 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 144 IPR017930 -
Car05g00992 542 CDD SANT 97 138 IPR001005 -
Car05g00992 542 ProSiteProfiles Myb-like domain profile. 90 140 IPR001005 -
Car05g00992 542 ProSiteProfiles Myb-like domain profile. 37 89 IPR001005 -
Car05g00992 542 SMART sant 41 91 IPR001005 -
Car05g00992 542 SMART sant 94 142 IPR001005 -
Car05g00992 542 MobiDBLite consensus disorder prediction 153 259 - -
Car05g00992 542 Pfam Myb-like DNA-binding domain 95 138 IPR001005 -
Car05g00992 542 Pfam Myb-like DNA-binding domain 42 89 IPR001005 -
Car05g00992 542 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 536 - -
Car05g00992 542 Gene3D - 41 94 - -
Car05g00992 542 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 536 - -
Car05g00992 542 SUPERFAMILY Homeodomain-like 39 136 IPR009057 -
Car05g00992 542 MobiDBLite consensus disorder prediction 23 42 - -
Car05g00992 542 MobiDBLite consensus disorder prediction 467 498 - -
Car05g00992 542 Gene3D - 97 143 - -
Car05g00992 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 89 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00992 Car-Chr5 50718630 50721535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00992 20 176 MYB Transcription Factor Family AT4G26930 62.346 2.00e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g00992 Myb_DNA-binding 4.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00992 - - lja:Lj6g3v0869180.1 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00992 05 50718630 50721535 Car05g00992 05 50718630 50721535 ECH