Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00989 ATGTTTTCCACCATTCTCCCGAACACCATCACCTCAAAATCCCACCATCCCTGCCCACCAATCCGCTGCGGCATCCGCGAAATCCGCGACCGAATCAACTCCGTCAAAAACACCCAAAAAATCACCGAAGCAATGAAACTCGTCTCCGCCGCCCGAGTCCGCCGTGCACAAGAAGCTGTTATCAACTCCCGCCCCTTCTCCGAAACCTTCGCTCAAGTTCTCCAAGACATCAACCAAAATCTCCAAAACGACGACGTAGAAGTCCCGTTAACCGCCGTCAGACCCGTCAAAAATGTCGCCCTAATCGTCATCACCGGCGACCGTGGCTTATGCGGCGGTTTCAACAACGCCGTTGCTAAAAAAGCAGAAACTCGAGTTCGCGAATTGAAGAAATTAGGGTTAGGTTGTGTTGTAATTAGTGTTGGTAAAAAGGGTAATAGTTATTTCACACGTAGGAGTTTCATTGAAGTTGATAGGTTTATTGAAAATAACGGTTTTCCAACAACAAAAGATGCTCAGATTATTGCCGACGATGTTTTTTCACTTTTTGTTAGTGAAGAAGTTGATAAAGTTGAACTTGTTTACACAAAGTTTGTTTCTTTAGTTAAGTTTGAACCAGTGATTCAAACTTTGTTACCGTTATCTAGAAAAGGTGAAGTTTTTGATGTGAATGGGAATTGTGTTGATGCATTTGGAGATGAGTTTTTTAGGTTAACTTCTAAGGATGGTAAGTTGGCATTAAAAAGAGATGTTTTTGTGAAGAAAAAAAATGATGGGTGTGTTCCTGTTATGGAATTTGAACAAGACCCCGTCCAGATTCTTGATGCAATGATGCCACTTTATTTGAATAGTCAAGTTTTGAAGGCTTTGCAAGAATCATTGGCTAGTGAACTTGCTGCTAGAATGGGTGCTATGTCTAGTGCAACTGATAACGCTGTTGAGTTGAAGAAGAATCTTTCTGTTGCTTATAATAGGGAAAGGCAAGCTAAGATTACTGGGGAGATTTTGGAGATTGTTGCTGGAGCTGAGGCATTAACACCAATTGATTGA 1050 0.4181 MFSTILPNTITSKSHHPCPPIRCGIREIRDRINSVKNTQKITEAMKLVSAARVRRAQEAVINSRPFSETFAQVLQDINQNLQNDDVEVPLTAVRPVKNVALIVITGDRGLCGGFNNAVAKKAETRVRELKKLGLGCVVISVGKKGNSYFTRRSFIEVDRFIENNGFPTTKDAQIIADDVFSLFVSEEVDKVELVYTKFVSLVKFEPVIQTLLPLSRKGEVFDVNGNCVDAFGDEFFRLTSKDGKLALKRDVFVKKKNDGCVPVMEFEQDPVQILDAMMPLYLNSQVLKALQESLASELAARMGAMSSATDNAVELKKNLSVAYNRERQAKITGEILEIVAGAEALTPID 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00989 349 PRINTS ATP synthase gamma subunit signature 96 115 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car05g00989 349 PRINTS ATP synthase gamma subunit signature 189 206 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car05g00989 349 PRINTS ATP synthase gamma subunit signature 292 311 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car05g00989 349 PRINTS ATP synthase gamma subunit signature 323 344 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car05g00989 349 Gene3D ATP synthase, gamma subunit, helix hairpin domain 24 90 - -
Car05g00989 349 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 25 345 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car05g00989 349 ProSitePatterns ATP synthase gamma subunit signature. 331 344 IPR023632 -
Car05g00989 349 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 24 345 IPR035968 GO:0015986|GO:0045261|GO:0046933
Car05g00989 349 Gene3D ATP synthase, gamma subunit, helix hairpin domain 252 345 - -
Car05g00989 349 Hamap ATP synthase gamma chain [atpG]. 22 345 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car05g00989 349 Gene3D - 91 215 - -
Car05g00989 349 CDD F1-ATPase_gamma 25 342 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car05g00989 349 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 17 345 - -
Car05g00989 349 PANTHER ATP SYNTHASE GAMMA CHAIN 17 345 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car05g00989 349 Pfam ATP synthase 25 345 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00989 Car-Chr5 50660445 50662072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00989 2 345 Primary Pumps ATPases AT1G15700 71.884 4.13e-178 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00989 K02115 - sind:105175342 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00989 05 50660445 50662072 Car05g00989 05 50660445 50662072 ECH