Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00982 ATGCCTATTCTCAACCTTTTTCCTGCTATGACAGAGTGGTTTTCTAGCAATGGTTGTTATGCATGTAGGCTATTGATGAAAGCTTTTGAGAAGCTTATTTTTGCTGAGTTTATTTTCATTTTAGCTCTAGGAGGGTCCATAGTGGGAATAATTGCAGGAGCAATTCAAGGGCATACCACAGAAGGTGGTTTTCTTGAAGGAGTTGGCAAAGGAGCTGTTACAGGTGCCATTGCAGCTCTTGAATTGTTCAATCCTGCTGTTTCTGATGAGCCAGTGTCTAAGGTTGTCCTATTGAAAGGTTTATTTAATGGGAAAGTATTTATGGAATGGATATGTCCAGCTGTTGCACAAGCTTATGAATGTCATATCAACACACAAGGAACAACAAACAGAGAATCATCAGATGTTTATGATGATAGAGGAGTCACACTCAAAGGCATGCCCCACAATTTTATTCAAAAGCTTCCTGTTCAGGAATTTGAATCTACCGAAATGTTGAAATATTACCATGAAAAAACGTGTTGCTCAATTTGCTTCCTGGACTTTGAGGAAGGAGAGTGTGTGAAGATACTTCCAAATTGTTGCCACATTTTTCATTTGGATTGCATTGACGAATGGTTAGTCCAAAAAGGATCGTGCCCAATGTGTCGAGCTTATGTCACACATTTATGA 672 0.3914 MPILNLFPAMTEWFSSNGCYACRLLMKAFEKLIFAEFIFILALGGSIVGIIAGAIQGHTTEGGFLEGVGKGAVTGAIAALELFNPAVSDEPVSKVVLLKGLFNGKVFMEWICPAVAQAYECHINTQGTTNRESSDVYDDRGVTLKGMPHNFIQKLPVQEFESTEMLKYYHEKTCCSICFLDFEEGECVKILPNCCHIFHLDCIDEWLVQKGSCPMCRAYVTHL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00982 223 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 220 - -
Car05g00982 223 Pfam Ring finger domain 175 217 IPR001841 -
Car05g00982 223 CDD RING-H2_PA-TM-RING 174 217 - -
Car05g00982 223 ProSiteProfiles Zinc finger RING-type profile. 175 217 IPR001841 -
Car05g00982 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 221 IPR013083 -
Car05g00982 223 SMART ring_2 175 216 IPR001841 -
Car05g00982 223 SUPERFAMILY RING/U-box 155 221 - -
Car05g00982 223 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 10 220 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00982 Car-Chr5 50496383 50499708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00982 31 220 C3H Transcription Factor Family AT5G66070 32.161 1.40e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00982 - K19041 gmx:100799697 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00982 05 50496383 50499708 Car05g00982 05 50496383 50499708 ECH