Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00974 atggctcttcgtgatgattttgagaggccttcTGCAATCCAACAAAGAGGAATTTTTCCTTTCTGCAAAGGTCTGGATGTGATTCAACAGGCTCAGTCAGAAATTGGGAAGACAACAACATTTTGTTATGGAATTTTGCAGCAGCTCGATTACAGATTGGTTCAGTGCCATGCTTTGGTTTTAACCCCTACGAGGGAGCTAGCTCAACAAATTGAGGAGGTTATGCGAGCTCTTGGCGATTTCCTTGGTGTTAAGGTTCATACTTTTGTTGGTGGGACAAGTGTTCGTGAGGATCAACGCATTCTCCCTGTTGCTTGTTTGTTATGA 327 0.3884 MALRDDFERPSAIQQRGIFPFCKGLDVIQQAQSEIGKTTTFCYGILQQLDYRLVQCHALVLTPTRELAQQIEEVMRALGDFLGVKVHTFVGGTSVREDQRILPVACLL 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00974 108 Pfam DEAD/DEAH box helicase 12 100 IPR011545 GO:0003676|GO:0005524
Car05g00974 108 Gene3D - 2 106 IPR027417 -
Car05g00974 108 PANTHER EUKARYOTIC INITIATION FACTOR 4A-3 6 103 - -
Car05g00974 108 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 18 108 IPR014001 -
Car05g00974 108 PANTHER RNA HELICASE 6 103 - -
Car05g00974 108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 102 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00974 Car-Chr5 50288205 50288531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00974 7 102 Eukaryotic Initiation Factors Gene Family AT3G13920 83.333 9.62e-52 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00974 K03257 - cam:105851799 184.882