Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00957 ATGAGTTGTTTTCATTGTTGTACGTCACAAAAGAGAATCAACAAGAGGTCATTGAAGAAAAGCATTAAGCAATATCATGATGCAAAAACTCTAACCTCATTTGCCAATATCTCTTTTAAAACTGATAGTGGCAAGAGAAGGTTCATAGCAGATGAGATAGCAAAGCTTGGAAAAGGAAATGTTACCTCTAAGATTTTCTCGTATCGCGAACTATGCGTCACAACTCAGAATTTTCACCCTTCCAATATGATTGGAGAAGGAGGTTTTGGAAGAGTTTACAGAGGAAGGATTGCAACCACAAATCAAGTTGTTGCTGTGAAACAACTTGACAGGAATGGATTTCAAGGGAACAGAGAATTTCTTGTAGAGGTTTTGATTTTGAGTCTTTTGCATCACCCTAACCTTGTAAACTTAGTAGGATATTGTGCTGAAGGTGATCAGAGGGTTTTGGTATATGAATACATGGCTAATGGTTCCTTAGAAGATCACTTGCTTGAATTAACTGAGGAAAGAAAGCCTTTGGATTGGCAAACTAGAATGAAAATAGCAGAAGGAGCGGCAAAAGGACTTGAATATTTACACGAGGAAGCGAACCCACCAGTGATATACCGCGATTTCAAAGCATCAAATATACTATTAGACGAAAACTACAATCCAAAACTTTCTGACTTTGGTCTTGCAAAGCTTGGTCCTACAGGCGATAAAACACATGTATCAACCAGAGTGATGGGAACTTACGGCTATTGTGCTCCCGAGTATGCATTGACAGGACAATTAAGTACAAAATCAGATGTGTATAGTTTTGGAGTCGTGTTTTTGGAGATCATCACAGGAAGAAGAGTCATTGACAATTCAAGACCATCAGAAGAGCAAAATTTAGTCACTTGGGCACAACCTCTACTTAGAGACAGAAATAAATTCAAACAAATGGCAGATCCATTGTTAGAAGATAACTACCCTATAAAGGGTCTATACCAAGCTCTAGCTGTTGCAGCAATGTGTCTCCAAGAGGAAGCTGATACTCGGCCTTTAATAAGCGATGTAGTTACAGCTCTTGAATTCTTAGCAAGGAAGAAAGAAGATGGTGAAGAACAAAATACAAAAGAGAATTTTGCTTCTCAAGGCGAAAATGGTAATGAAGACAATAAATCTAATGTAGTAAATgatgaggaggaggacgaggacgaggacgaaaacgatgatgataaagaggatgaggatgaggatggtgatgataatgaggatgagaatgatgatagtgataatgagaatgagaatgataatgaggatgaTAAAGGTAATACAAGATAG 1311 0.341 MSCFHCCTSQKRINKRSLKKSIKQYHDAKTLTSFANISFKTDSGKRRFIADEIAKLGKGNVTSKIFSYRELCVTTQNFHPSNMIGEGGFGRVYRGRIATTNQVVAVKQLDRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCAEGDQRVLVYEYMANGSLEDHLLELTEERKPLDWQTRMKIAEGAAKGLEYLHEEANPPVIYRDFKASNILLDENYNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYALTGQLSTKSDVYSFGVVFLEIITGRRVIDNSRPSEEQNLVTWAQPLLRDRNKFKQMADPLLEDNYPIKGLYQALAVAAMCLQEEADTRPLISDVVTALEFLARKKEDGEEQNTKENFASQGENGNEDNKSNVVNDEEEDEDEDENDDDKEDEDEDGDDNEDENDDSDNENENDNEDDKGNTR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00957 436 MobiDBLite consensus disorder prediction 360 436 - -
Car05g00957 436 SUPERFAMILY Protein kinase-like (PK-like) 62 355 IPR011009 -
Car05g00957 436 PANTHER OS07G0668900 PROTEIN 1 375 - -
Car05g00957 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Car05g00957 436 MobiDBLite consensus disorder prediction 368 382 - -
Car05g00957 436 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Car05g00957 436 Gene3D Transferase(Phosphotransferase) domain 1 155 381 - -
Car05g00957 436 Pfam Protein kinase domain 79 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00957 436 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 375 - -
Car05g00957 436 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00957 436 CDD STKc_IRAK 84 353 - -
Car05g00957 436 MobiDBLite consensus disorder prediction 386 428 - -
Car05g00957 436 Gene3D Phosphorylase Kinase; domain 1 51 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00957 Car-Chr5 49974561 49978091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00957 60 356 Glycoside Hydrolase AT3G07070 70.707 1.14e-161 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Car05g00957 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00957 - - cam:101510927 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02021 02 50669640 50673814 Car05g00957 05 49974561 49978091 ECH
Car05g00957 05 49974561 49978091 Car05g00957 05 49974561 49978091 ECH
Car05g00957 05 49974561 49978091 Car02g02021 02 50669640 50673814 PCT