Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00953 ATGTCACCCAGCTTTCTCTTCGACCCTCCCAGCGACGAAGAAATCGAACACTCCGAAATagaagacgaagaagaaaacaacgaagaagaagaagaaTCCGAACCCGAATTGGAATCAGAagaagaaggagaagaaggagaagaaggagaagaaggagaagaGCCCAAAGAACCGAAAGTTTCAAAGAAGAAAACACAATCTCCATGGGACTTCACCAAATACTCAGAATCAGTTGCAGAAGAACACGCTCGCAGGAGCACAACCTCCGTAGACGACAAAATCTATGCAGTCAGACAACGTTCCAAGCCCGTCGTTGCTTTGCCTGATTCGGATGAAGACAACAGTAGCTCTGACTCTGAACCTGATAAACAAGAAGATTATAGACCGgaagaagaagatgaagaagaGGGTAATGCTGGTGACAACAAGTCCTTTTTTGCTCCTTCTGAGGGAACCTCTTTCAATGCTGATTCCTTCTTGCAACTCAATTTATCTCGTCCTTTGCTCCGAGCTTGTGAAACCCTGGGGTATTCTAAACCAACACCAATTCAGGCTGCTTGTATACCATTAGCCTTGACTGGCCGCGATATATGTGGAAGTGCCATTACTGGATCGGGAAAGACAGCCGCGTTTGCACTACCTACTTTAGAGAGGTTGCTGTTCCGTCCAAAACGCATGCATGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCAGCCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAATTTACTGATATAAGGTGTTGCTTGATTGTTGGTGGTTTGTCAACAAAGGTGCAAGAGGCTGCCTTAAGATCAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGATCATTTGCGTAATTCTATGTCTGTGGATTTGGATGATCTTTCTGTTTTAATCCTCGATGAAGCAGATCGTCTTTTGGAGCTTGGATTTAATGCTGAAATTCAAGAACTTGTTCGCGTGTGTCCAAAAAAAAGACAGACCATGCTGTTTTCAGCAACCATGACTGAGGAGGTTGATGATCTTATTAAACTTTCCCTGTCAAAACCCCTGCGTCTTTCTGCTGATCCATCTGCAAAACGACCAGCATCCTTGACTGAGGAGGTGGTTAGAATAAGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCACCAAAACTTTTACTTCTAAAGTGATCATTTTCAGTGGAACGAAGCAAGCTGCACATAGGTTGAGGATTATATTTGGATTAGCTGGATTGAAGGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAACGTCTTGAAGCTTTGGAACAATTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACTGATGTGGCTGCTCGTGGTCTTGACATCATTGGTGTTCAAACTGTTATCAATTTTGCATGTCCACGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGAAGAGCAGGATCTGCTGTCACGTTTGTTACTGATAATGACCGGTCACTTCTAAAATCTATTGCAAAGAGGGCCGGTTCAAAGCTGAAAAGCCGCATTGTTGCAGAGCAATCTATACTCAAATGGTCTCAAGTAATTGAGCAAATGGAGGATCAAGTTTCTGAAGTCCTTCAGGAAGAGAGGGAAGAAAGGATCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAGAGAAGAGATCTTCTCCCGCCCCAAAAGAACTTGGTTTGTTACAGAGAAGGAGAAGAAGCTTTCGGCAAAAGCAGCCAAGGCATCCATGGATAAGGAAAATGGTTCTTCTGGGAAGGAGGTAATGAGTGCTCAGCAAGCTGAAGACCTTAAAATGAAGGAAAAGAGGAAGCGGGAGCGAGAGAAAAATTTGCCTAGAAAGAAGCGCAGAAAATTGGAAGCAGCTAGAGAGATGTTGGAGGATGAGGAGCAAGATCACAAGCCAGTAAAAGGTAAGGGGGCAGATGAGATAGAAAAGGGAGGAATGTCACTTGTTGATCTTGCATACCGACGTGCCAAAGCAGTGAAGGCCACCAAGAGGGCACTAGATTCTGGAAAGATTGTGAAGAAGCCTCAAAAGAAATCTAATAATAAAAAATCTAGTTCTTCCCGAAAGCCTTCTTCAAGGACAGAAGAGATGCGGGAGCTTTTCCAGACTGACATGAAGGATAAAAAGCCAAAATCAAGAGGTCCTGGAGTAGGAAAGAAAGCCAATAAATCATTCAAAAGCAAGTCAAGGTACAAGAGGAAGTAG 2307 0.4222 MSPSFLFDPPSDEEIEHSEIEDEEENNEEEEESEPELESEEEGEEGEEGEEGEEPKEPKVSKKKTQSPWDFTKYSESVAEEHARRSTTSVDDKIYAVRQRSKPVVALPDSDEDNSSSDSEPDKQEDYRPEEEDEEEGNAGDNKSFFAPSEGTSFNADSFLQLNLSRPLLRACETLGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLSVLILDEADRLLELGFNAEIQELVRVCPKKRQTMLFSATMTEEVDDLIKLSLSKPLRLSADPSAKRPASLTEEVVRIRRMREVNQEAVLLAMCTKTFTSKVIIFSGTKQAAHRLRIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGSAVTFVTDNDRSLLKSIAKRAGSKLKSRIVAEQSILKWSQVIEQMEDQVSEVLQEEREERILRKAEMEATKAENMIAHREEIFSRPKRTWFVTEKEKKLSAKAAKASMDKENGSSGKEVMSAQQAEDLKMKEKRKREREKNLPRKKRRKLEAAREMLEDEEQDHKPVKGKGADEIEKGGMSLVDLAYRRAKAVKATKRALDSGKIVKKPQKKSNNKKSSSSRKPSSRTEEMRELFQTDMKDKKPKSRGPGVGKKANKSFKSKSRYKRK 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00953 768 PANTHER BNAA01G17110D PROTEIN 59 288 - -
Car05g00953 768 PANTHER BNAA01G17110D PROTEIN 313 734 - -
Car05g00953 768 MobiDBLite consensus disorder prediction 75 98 - -
Car05g00953 768 MobiDBLite consensus disorder prediction 644 677 - -
Car05g00953 768 Pfam DEAD/DEAH box helicase 181 351 IPR011545 GO:0003676|GO:0005524
Car05g00953 768 MobiDBLite consensus disorder prediction 113 138 - -
Car05g00953 768 Coils Coil 535 575 - -
Car05g00953 768 MobiDBLite consensus disorder prediction 692 768 - -
Car05g00953 768 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 308 316 IPR000629 -
Car05g00953 768 PANTHER RNA HELICASE 313 734 - -
Car05g00953 768 PANTHER RNA HELICASE 59 288 - -
Car05g00953 768 MobiDBLite consensus disorder prediction 722 748 - -
Car05g00953 768 Coils Coil 13 40 - -
Car05g00953 768 MobiDBLite consensus disorder prediction 601 677 - -
Car05g00953 768 CDD DEADc_DDX27 168 363 - -
Car05g00953 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 517 IPR027417 -
Car05g00953 768 MobiDBLite consensus disorder prediction 692 708 - -
Car05g00953 768 Coils Coil 622 642 - -
Car05g00953 768 MobiDBLite consensus disorder prediction 1 147 - -
Car05g00953 768 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Car05g00953 768 Pfam Helicase conserved C-terminal domain 394 497 IPR001650 -
Car05g00953 768 Gene3D - 118 364 IPR027417 -
Car05g00953 768 MobiDBLite consensus disorder prediction 14 52 - -
Car05g00953 768 SMART ultradead3 176 377 IPR014001 -
Car05g00953 768 CDD SF2_C_DEAD 374 506 - -
Car05g00953 768 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 373 536 IPR001650 -
Car05g00953 768 Gene3D - 381 633 IPR027417 -
Car05g00953 768 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 362 IPR014001 -
Car05g00953 768 SMART helicmild6 412 497 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00953 Car-Chr5 49865374 49875685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00953 157 514 Eukaryotic Initiation Factors Gene Family AT3G13920 32.964 6.59e-49 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00953 K13181 - gmx:100776684 1063.52