Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00919 ATGGAGCTTCCAAATCATGAAGATGGAGAAGGATCTTCCCAAAAGAAAATGGGAAGAGGGAAGATTGAAATCAAGAGGATCGAAAACACGACGAATAGACAAGTCACCTTTTGCAAACGACGCAACGGATTGTTGAAGAAAGCCTATGAATTATCTGTTCTTTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCAACTCGTGGTCGCTTGTATGAGTACGCAAACAACAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCATGTTCTGCTACCACTAACGCAGAATCTGTATCTGAAGCTAATACCCAGTTTTACCAGCAAGAATCATCCAAATTGAGAAGACAGATTCGAGATATTCAGAATCTTAATAGACACATCCTTGGTGAAGCTCTAGGATCTTTGAGTCTCAAGGAACTAAAGAATCTTGAGGGTAGATTGGAGAAAGGTTTGAGCAGAGTAAGATCAAGAAAGCATGAAACGTTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGATCTGCAAAACCAGAACAATTATCTGCGAGCTAAGATAGCTGAATGTGAAAGAGCTCAACAACAGCAACAAAATATGATGCCAGAAACATATTCTGAGTCCTTACCTTCACAATCATATGACAGAAATTTCTTTCCTGTAAATCTTCTTGGATCGGATCAGCAGTATTCACGCCAAGACCAAACTGCTCTCCAACTTGTCTGA 726 0.3994 MELPNHEDGEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACSATTNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIDLQNQNNYLRAKIAECERAQQQQQNMMPETYSESLPSQSYDRNFFPVNLLGSDQQYSRQDQTALQLV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00919 241 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Car05g00919 241 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Car05g00919 241 Coils Coil 106 126 - -
Car05g00919 241 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car05g00919 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Car05g00919 241 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Car05g00919 241 MobiDBLite consensus disorder prediction 1 24 - -
Car05g00919 241 CDD MADS_MEF2_like 18 91 IPR033896 GO:0000977|GO:0045944
Car05g00919 241 PANTHER MADS BOX PROTEIN 13 235 - -
Car05g00919 241 Coils Coil 176 196 - -
Car05g00919 241 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Car05g00919 241 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Car05g00919 241 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Car05g00919 241 SUPERFAMILY SRF-like 18 93 IPR036879 GO:0003677|GO:0046983
Car05g00919 241 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car05g00919 241 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 13 235 - -
Car05g00919 241 Gene3D - 29 99 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00919 Car-Chr5 48588690 48597721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00919 10 241 MADS-box Gene Family AT3G58780 71.667 1.97e-119 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car05g00919 K-box 3e-25 No_clan