Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00912 ATGGACAAACATTCCGGGGATTCGTTGCCGGCTCATGGTCCTGCAGGCCTGTCTGAGATTCCCTCACTTAACATTCCGAAAAGAGTGGGAAGCAGTGCATGGAGAATACCGCACACAACCGATGTATTTCATGATTCAAATGATGTTAGCTTGTTTTCTACTTCACTTCCTGTTCTTCCCCATGAAAAGTTAAATTTGACCGATTCCGAACAAAATGGTCAACTTGCGGACGATAACTTGCTAACATTAGACAAAGTTCACAAAGAGGAGGATGAGGGACATGATCCTTTTGATGATTTTGAAAACAATGCCATTGGAAACATGCTTCCTGACGATGAAGACGAGCTTTTAGCTGGAATAATGGATGATTTCGACCTTAGTAGGTTACCGAGTCAACTCGAGGATTTGGATGAAAATGATCTGTTTGTTAATGGAGGGGGATTTGAAATGGATTTTGAACCCCAAGAGAGCCTTAGTTTTGGTTTGTCAAAGATAAGCATATCAGATGGAATGGCTTCAAATGGTATTGGATCTTATGCAATTGCAAATGGTGTGGGAACAGTTGCCGGGGAGCATCCATACGGTGAGCATCCATCCAGGACTTTGTTTGTTCGAAACATCAACAGTAACGTTGAGGACTCTGAACTAAGAACACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCACAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAACCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCGAAGGATAACCCCTCGGAAAAAGATATAAACCAAGGAACCCTTGTAGTGTTCAATTTAGATCCTTCGGTAACTAATGACGACCTTCGCCAAATATTTGGGGCTTATGGTGAAGTCAAGGAGATCAGGGAAACGCCGCATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCATTAAATCGAAGTGACATTGCTGGAAAGCGCATAAAACTTGAACCTAGCCGCCCTGGTGGAGCACGCAGAAACTTGATGCAACAACTGACTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGGAGTCAAATCGGTTCACCTATTGCCAATTCTCCCCCAGTAGGCAATGTTTTCACAGGTAGCTGGGCGCAATTCAGTAGTCCTGTTGAACCGAATCCATTAGGTTCGTACAGTAAGTCCCCTGGTTTGGGTCATGCCATTGGCAGCCCTATTAATACCAACCATTTGTCTGGATTGGCCGCAATACTTTCCCCGCATACATCAACCTCTCCCAAAATTGCGCCAATTGGCAAGGACCCTGGAAGAGTTTCAAATCAGATGTTTGCCACCTCTGGATCATCAACACAAGGAACAGCTTTTCAGCATTCTATCTCCTTTCCGGAACAAAAAGTAAATGCAAGTCCTCGGCCTATATCTGCTTTTGGTGAATCAAATTCAAGTTCATCGAGTGTTGGAACGCTGTCTGGTCCTCAATTTCTTTGGGGAAGCCCGACTCCTTACTCGGAACATTCAAACACATCTGCGTGGTCTTCGTCTTCTCTGGGACATCCATTTACTTCTAGTGGCCAAAGGCAGGGTTTCCCTTACACCGGTCATCGCAGTCCTTTCCTTGGCTCCCAGCACCATCATCATGTAGGATCTGCTCCATCTGGTCTTCCTCTTGAACGAAATTTCCGATACTTTCCAGAGTCACCCGATGCTTCTCTCATGAGCCCTGTTGGATTTGGGAATTTAAATCACAGTGATGGAAATTTTATGATGAACATGGGGTCTCATCCGTCTGTAGGGCATGGTATTGGCCTTTCAGCAACTACGAGTGAAATCGGATCTCCTAATTTCCGAATGATGTCCCTACCTGGTCATGGTTCCTTGTTCCTTGGAAATAGTTTGTATGCTGGACCAGGAGTAACTAACCTCGACGGATTAGGTGAACGTGGACGAATTAGGCGACCAGACAATAATGTGAATCAAATTGAGAGTAAGAAGCTGTACCAGCTGGATCTCGACAAAATCATCGGTGGGGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCGAAGATGCTACTTGCTGCAATTGATGAGAATCACCAAGGGACTTATGATTTTCTCTATCTGCCTATTGACTTCAAAAATAAATGTAACGTGGGTTATGCTTTCATCAATATGGTCTCTCCTTCACACATCGTCCCTTTCTATAAGGCTTTTAATGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCACTGGCGTATGCGCGGATTCAGGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCAAGCTTAATGAATGAGGACAAGCGGTGTCGACCAATCCTCTTTCACTCAGAGGGCCAAGATACTAGTGACCAGGAACATTTTCTATCGAGCAACTTGAACATATGCATTCGTCAACCGGATGGAACTTACTCAGGTGATTTGTTGGAGAGCCCAAAGGGCAATTCGGATGAGAATCTAGAGAAAGATTAA 2601 0.4329 MDKHSGDSLPAHGPAGLSEIPSLNIPKRVGSSAWRIPHTTDVFHDSNDVSLFSTSLPVLPHEKLNLTDSEQNGQLADDNLLTLDKVHKEEDEGHDPFDDFENNAIGNMLPDDEDELLAGIMDDFDLSRLPSQLEDLDENDLFVNGGGFEMDFEPQESLSFGLSKISISDGMASNGIGSYAIANGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVTNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLTQELEQDEARTFRSQIGSPIANSPPVGNVFTGSWAQFSSPVEPNPLGSYSKSPGLGHAIGSPINTNHLSGLAAILSPHTSTSPKIAPIGKDPGRVSNQMFATSGSSTQGTAFQHSISFPEQKVNASPRPISAFGESNSSSSSVGTLSGPQFLWGSPTPYSEHSNTSAWSSSSLGHPFTSSGQRQGFPYTGHRSPFLGSQHHHHVGSAPSGLPLERNFRYFPESPDASLMSPVGFGNLNHSDGNFMMNMGSHPSVGHGIGLSATTSEIGSPNFRMMSLPGHGSLFLGNSLYAGPGVTNLDGLGERGRIRRPDNNVNQIESKKLYQLDLDKIIGGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGTYSGDLLESPKGNSDENLEKD 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00912 866 MobiDBLite consensus disorder prediction 495 514 - -
Car05g00912 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 358 IPR000504 GO:0003723
Car05g00912 866 Pfam RNA recognition motif 2 706 802 IPR007201 -
Car05g00912 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 266 IPR000504 GO:0003723
Car05g00912 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 352 IPR000504 GO:0003723
Car05g00912 866 CDD RRM3_MEI2_like 709 794 IPR034454 -
Car05g00912 866 PANTHER PROTEIN MEI2-LIKE 2 14 861 - -
Car05g00912 866 MobiDBLite consensus disorder prediction 449 480 - -
Car05g00912 866 MobiDBLite consensus disorder prediction 1 23 - -
Car05g00912 866 MobiDBLite consensus disorder prediction 532 577 - -
Car05g00912 866 CDD RRM1_MEI2_like 199 275 IPR034453 -
Car05g00912 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Car05g00912 866 Gene3D - 188 284 IPR012677 -
Car05g00912 866 SMART rrm1_1 286 354 IPR000504 GO:0003723
Car05g00912 866 SMART rrm1_1 201 269 IPR000504 GO:0003723
Car05g00912 866 SMART rrm1_1 708 784 IPR000504 GO:0003723
Car05g00912 866 PANTHER RNA RECOGNITION MOTIF-CONTAINING 14 861 - -
Car05g00912 866 SUPERFAMILY RNA-binding domain, RBD 197 360 IPR035979 GO:0003676
Car05g00912 866 SUPERFAMILY RNA-binding domain, RBD 708 793 IPR035979 GO:0003676
Car05g00912 866 MobiDBLite consensus disorder prediction 532 556 - -
Car05g00912 866 MobiDBLite consensus disorder prediction 465 480 - -
Car05g00912 866 Gene3D - 285 381 IPR012677 -
Car05g00912 866 CDD RRM2_MEI2_like 284 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00912 Car-Chr5 48322564 48328935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00912 195 406 Eukaryotic Initiation Factors Gene Family AT3G16380 25.532 4.10e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00912 - - gmx:100812324 1486.47