Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00901 ATGTCTTTGAAAGTCGAATTGTCGAAGAAGACTTCATTTTTAGGTTTGAGGTTATGGGTTTTGATAGGAATAGGTGTTGGTGCATTTATAGTTCTGATTCTTTGTATATTATCTATGTGGATAATGTTTCGGCGAAAAACAAAAAGATCTGTGGACAAGTACTCGTTATTTCAAATACCACACGTCTCGAAAGATATCACAGTCGACAAAGTTGGTGAGCAACCTTCTCATGATCAAGTAGAGAGTGTGTCTATTCATGTTCATGACAACTTACCACCAAGTGATAAGAATTCGGAGAAGTTGTTTGTTCATTTGAGCAAATCCAGTGATCCTGATAATGTTAGTCAATGTAGCTCGATTTATCATCACGAGAGAGGACTTAGTTCGATATCGGGAGAAGATGGAAACTTCGGAAATGTTAAGAAGCACTCTACATTGTCATATGGAGGGGCGGTAACTGCATCTCCTCTGATTGGCTTACCTGAAGTTTCTCATCTTGGGTGGGGGCATTGGTTCACACTTAGAGATCTCGAACTTTCAACTAACCGTTTTGCCGCGGAGAATGTTATCGGTGAGGGCGGATATGGAGTTGTTTATAAGGGAACATTGATTAATGGATCCAAGGTGGCAGTGAAGAGACTTCTTAACAACTTGGGACAAGCCGAGAAAGAATTTAGGGTTGAAGTCGAGGCTATAGGCCATGTCAGACATAAAAATCTTGTGCGCTTACTCGGATTTTGCATAGAAGGAGTTCACAGGTTACTTGTGTATGAGTATGTGAACAATGGTAACTTAGAACAATGGTTACATGGGGCAATGAGCCAACACGGGGTACTTACATGGGAAGCTCGCATGAAAGTTATTCTCGGCACAGCCAAAGCGCTTGCTTACTTACATGAAGCAATAGAACCGAAAGTTGTTCACCGGGATATAAAGTCTAGCAACATTTTAATTGATAGCGAGTTCAATGCAAAGGTTTCTGATTTCGGTTTAGCCAAACTTTTGGATTCAGGAGAAAGTCACATAACTACCAGAGTAATGGGAACATTTGGTTATGTTGCACCAGAATATGCTAATTCCGGCTTGTTAAATGAGAAGAGCGACATTTACAGCTTTGGCGTTCTCTTACTAGAAGCGATTACCGGAAGGGACCCTGTAGACTATACGCGTCCAGCCAATGAGGTGAATCTTGTTGAGTGGCTTAAAATGATGGTGGGGACAAGGAGGGTCGAAGAAGTTGTGGACTCGAGCCTTGAAGTGAAACCATCAACACGTGCTTTAAAGCGTGCTCTTCTTGTTGCGTTTAGGTGTGTCGATCCTGATGCAGAGAAGAGACCTAAAATGAGTCAAATTGTGAGGATGCTTGAAGCTGATGAATATCCATTCAGAGAGGTTCCTTTCATTATCTTATCTTTTCATTTATAA 1425 0.4126 MSLKVELSKKTSFLGLRLWVLIGIGVGAFIVLILCILSMWIMFRRKTKRSVDKYSLFQIPHVSKDITVDKVGEQPSHDQVESVSIHVHDNLPPSDKNSEKLFVHLSKSSDPDNVSQCSSIYHHERGLSSISGEDGNFGNVKKHSTLSYGGAVTASPLIGLPEVSHLGWGHWFTLRDLELSTNRFAAENVIGEGGYGVVYKGTLINGSKVAVKRLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGFCIEGVHRLLVYEYVNNGNLEQWLHGAMSQHGVLTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDSEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAITGRDPVDYTRPANEVNLVEWLKMMVGTRRVEEVVDSSLEVKPSTRALKRALLVAFRCVDPDAEKRPKMSQIVRMLEADEYPFREVPFIILSFHL 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00901 474 Coils Coil 204 224 - -
Car05g00901 474 ProSitePatterns Protein kinases ATP-binding region signature. 190 212 IPR017441 GO:0005524
Car05g00901 474 Gene3D Transferase(Phosphotransferase) domain 1 260 463 - -
Car05g00901 474 SMART serkin_6 184 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00901 474 PANTHER OS01G0323000 PROTEIN 2 464 - -
Car05g00901 474 SUPERFAMILY Protein kinase-like (PK-like) 168 459 IPR011009 -
Car05g00901 474 PANTHER RECEPTOR-LIKE KINASE PLANT 2 464 - -
Car05g00901 474 CDD STKc_IRAK 190 456 - -
Car05g00901 474 Gene3D Phosphorylase Kinase; domain 1 165 259 - -
Car05g00901 474 Pfam Protein kinase domain 186 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00901 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672|GO:0006468
Car05g00901 474 ProSiteProfiles Protein kinase domain profile. 184 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00901 Car-Chr5 48168735 48172104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00901 15 458 Trihelix Transcription Factor Family AT1G70460 39.602 5.71e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Car05g00901 Pkinase 7.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00901 - - gmx:100813931 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00901 05 48168735 48172104 Car02g01981 02 50317741 50322242 PCT
Car02g01305 02 39035060 39038730 Car05g00901 05 48168735 48172104 PCT