Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00883 atgcaccattttctgattactAGATTCATTCATAGAACCCTAAATTCCAGTGTTATTTCCCAACATGCTTTTTCTCTATTCTTCAACTATCGTTATTTCTCTGTTGAGTCTGTTCCCAATACAAATAACCATAAAGGTGACACCTTTACGTTATCAACCCTCGTAAATTCATGTGGGTTATCCCCAGAAACAGCCCTTAAACTCTCCAAAAGGTTGCAAATCAAAAACCCTAATTCCCCAAATGATGTTACTCAACTTCTCAAAACCTATGGCTTCTCTGATTCACAGTTATGTAGTTATGTCAAAAAACACCCTTTGGTTCTTTTATCAGATCCTAAAAAGACCCTTTTGCCCAAACTCAAGTTTTTTCATTCCATTGGGGTTTCTACCACTGATCTCCCCAAAATCCTCATTGGGAACACTTCCTTTTTGTCAAAAAGCTTGGAGAAAACCCTTATCCCTCGTTATGAAATCATTCGAAGCCTAGTTCGGAATGATGAAGAGGTAGTTTCAACTTTGAAGCATGGTTCATGGAACCTTCATTGTGTTTGGGTTGTAAATGATGCAGTTCAAAACATTGAGGTTTTGAAGCAACTTGGTGTTCCTCAAGGTTCCATTTCCCTTTTGGTATCTAATTTTCCAAGTGTAGCATTCGCCAAGCATAGCAAATTTGTTGAGGCTGTTAATTCAGTGAAGGAAATGGGGTTTGATCCTTTGAAGTCGAAATTTGTTTTGGCAGTTCAAGTCATTGCAAAGATGGACAAAGAAACTTGGGAATCAAGATTTAAGATTTTCGAGAAGTTTGGCTGCTCGAGAGATATATGTCTTTCGGCTTTCCAGAAAGAACCTCAGTATATGATGATTTCAGAAAAGAAGCTTATGAAAACACTGAACTTCTTGGTGAAAGATGTGGGCTTTAAACCAGAAGACATTATGAGAAGGCCTGGGATTCTGAACCGAAACTTGGAGAAGACAATTATACCTAGATGGGCTGTTCTTCAAATTTTGAAGTCAAAGGGTTTGATAAAGAGTGGCTTTTTCATTGGTAGTGCTATTGCGATTAGTGAGAAAACATTTTTGGATAAATATGTAACCCGATTTCAAAAAGACGCCCCTCTGTTGTTGGATGCATATAAAGGTCACAAGTTAGATTGA 1155 0.3714 MHHFLITRFIHRTLNSSVISQHAFSLFFNYRYFSVESVPNTNNHKGDTFTLSTLVNSCGLSPETALKLSKRLQIKNPNSPNDVTQLLKTYGFSDSQLCSYVKKHPLVLLSDPKKTLLPKLKFFHSIGVSTTDLPKILIGNTSFLSKSLEKTLIPRYEIIRSLVRNDEEVVSTLKHGSWNLHCVWVVNDAVQNIEVLKQLGVPQGSISLLVSNFPSVAFAKHSKFVEAVNSVKEMGFDPLKSKFVLAVQVIAKMDKETWESRFKIFEKFGCSRDICLSAFQKEPQYMMISEKKLMKTLNFLVKDVGFKPEDIMRRPGILNRNLEKTIIPRWAVLQILKSKGLIKSGFFIGSAIAISEKTFLDKYVTRFQKDAPLLLDAYKGHKLD 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00883 384 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Car05g00883 384 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Car05g00883 384 SMART mt_12 308 342 IPR003690 GO:0003690|GO:0006355
Car05g00883 384 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Car05g00883 384 SMART mt_12 241 271 IPR003690 GO:0003690|GO:0006355
Car05g00883 384 SMART mt_12 207 237 IPR003690 GO:0003690|GO:0006355
Car05g00883 384 Gene3D Transcription termination factor 3, mitochondrial 165 370 IPR038538 -
Car05g00883 384 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 27 381 - -
Car05g00883 384 Pfam mTERF 251 359 IPR003690 GO:0003690|GO:0006355
Car05g00883 384 Pfam mTERF 85 237 IPR003690 GO:0003690|GO:0006355
Car05g00883 384 PANTHER CGI-12 PROTEIN-RELATED 27 381 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00883 Car-Chr5 47525694 47527424 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Car05g00883 mTERF 9.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00883 K15032 - gmx:106799612 436.417