Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00882 ATGCACCGTTTTTTGTTTACTAGATTCACTCATAGAACCCTTCGTTCTGTTATTCTTTCCCACGATGCTTTTTCTCTTTTATTCATTCATCGTTCTTTCTCTGTTGCTAACACAAATCACCATCATAAAGATGAAACCTTTACGTTATCAACCCTCGTAAATTCGTATCCTGAAAAGACCCTTTTGCCCAAACTCAAGTTTTTTCATTCCATTGGGGTTTCAACCACTGATCTCCCCAAAATCCTCATTGGGAACACTTCCTTTTTAACTAAAAGCTTGGAGAAAACCATTATCCCTCGTTATGAGATTATTCGGAGCCTAGTTCGGAATGATGAAGAGGTAGTTTCAACCATGAAGCATGGTTCATGGAACGTTCATTCTGTTTGGGTTGTAAATGATGCAGTTCAAAACATTGAGGTTTTGAGGCAACTTGGTGTGCCTCAAGGTTGCATTTCCCTTTTGGTATCAAATTTTCCGAGTGTAGCATTCGCCAAGCATAGTAAATTTGTTGAGGCTGTTAATATAGTGAAAGAAATCGGGTTTGATCCTTCGAAGTCGAATTTTGTTTTGGCAGTTCAAGTAATTGCAAAGATGGACAAAGAAATTTGGGAGTCGAGACTTAAGATTTTCGAGAGGTGGGGTTGGTCGAGAGACTTATGTCGTTTGGCTTTCCGAAAATATCCTCAGTGTATGATGATTTCAGAAAAAAAGATTATGAAAACAATGAGCTTCTTGGTGAAGGATATGGGTTTTACCCAAGAAGACATTGCTAAAAGCCCCATGATTCTGAACCGCAACTTCGAGAAAACATTAGTCCCTAGATATGCAGTTGTTAAGATTTTGAAGTCAAAGGGTTTGATAAAGAGAGATTATAGCATAACTAGCATTATTTCAATTAGCGAGAAAAAGTTTTTGGGGAGATTCGTCACCCGATTTCAAAAAGATGCAGCTCTGTTAATGGATGCATATAATGGTCACAAGTTAGATTAA 990 0.3788 MHRFLFTRFTHRTLRSVILSHDAFSLLFIHRSFSVANTNHHHKDETFTLSTLVNSYPEKTLLPKLKFFHSIGVSTTDLPKILIGNTSFLTKSLEKTIIPRYEIIRSLVRNDEEVVSTMKHGSWNVHSVWVVNDAVQNIEVLRQLGVPQGCISLLVSNFPSVAFAKHSKFVEAVNIVKEIGFDPSKSNFVLAVQVIAKMDKEIWESRLKIFERWGWSRDLCRLAFRKYPQCMMISEKKIMKTMSFLVKDMGFTQEDIAKSPMILNRNFEKTLVPRYAVVKILKSKGLIKRDYSITSIISISEKKFLGRFVTRFQKDAALLMDAYNGHKLD 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00882 329 Gene3D Transcription termination factor 3, mitochondrial 129 315 IPR038538 -
Car05g00882 329 Gene3D Transcription termination factor 3, mitochondrial 43 128 IPR038538 -
Car05g00882 329 PANTHER CGI-12 PROTEIN-RELATED 50 326 IPR003690 GO:0003690|GO:0006355
Car05g00882 329 Pfam mTERF 197 305 IPR003690 GO:0003690|GO:0006355
Car05g00882 329 Pfam mTERF 53 186 IPR003690 GO:0003690|GO:0006355
Car05g00882 329 SMART mt_12 44 74 IPR003690 GO:0003690|GO:0006355
Car05g00882 329 SMART mt_12 221 252 IPR003690 GO:0003690|GO:0006355
Car05g00882 329 SMART mt_12 253 287 IPR003690 GO:0003690|GO:0006355
Car05g00882 329 SMART mt_12 79 110 IPR003690 GO:0003690|GO:0006355
Car05g00882 329 SMART mt_12 152 182 IPR003690 GO:0003690|GO:0006355
Car05g00882 329 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 50 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00882 Car-Chr5 47492642 47493789 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Car05g00882 mTERF 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00882 K15032 - gmx:106799612 347.436