Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00869 ATGAACGACAGTGTTTCGGAATGGAATTTTGAAAGTGATACCTATGTCACCAATCAAAAGAAGTCTATAGGGCTTGATCATGAACTTGTGGAGCTTCTATGGCAGAATGGCCAAGTAGTCTTGCATAGTCAAACAAATAGGAAACCAATCACTTCAAGACATGTTCAAAAGAATCTTCAATCAACAACATTAAGGACTAATGAAACATTTGGAAGTTCAAGCAATTTGATTCAAGATGATGAGACAGTTTCATGGATTCATTACCCTCTTGAGGATCCATTAGAACAAGAATTATGTTCCAACCTTTTATCTGAACTTTCACCTTGTGATGATGTTGTTGAGTCTTACAAACAAATTAGGAATTTTGAAGAGGGAAAGTTTTCCAAATTGGATGCTTCTAGTGATCCTCATGCGAATATAAATTCGCAACCGAGTAATTTGAAACCTTCCTTTGTTCAGGAATTCTCTAAGCCGGATCAAAGGTTTCATCATGCTCCTGATTCGTCGCACAAGATTCTAAACTTTTCTCACTTTTCAAGACCACCTAATGTTTCTTCTGTGACTGGTAAAGGCGATGCGCATTTTAGAGACAAAGTTACTTCTGGCAATTTGTCACAAGGCGATATTAGAGAGTGTTCGGCGATGACAGTTGTTTCGAGTTATTGTGGAAGTAACCACATCCCTCAAGATCAAGATGTAAGCAGAGTATCAAGCAACGGTGTTTGGAATACTACTTTATCAGCCGAGCCCAAACCAGTCAAAGATGACATTCATAAAACAATTCCTCGGCATGAGAAAGGGAAATCTGAGATGATCGAACCAACTGTTACTTCATCTTCTGGTGGATCAGGAAGTAGTCTTGGAAAAACTTCTTCCTTATCTACAAGAAGCCATGGACAAAAGAGGAAAATTATCGATGTCGAAGACTCGGTTGAACAAAGTGAGGACACAGAACTTAAATCAGCTGTCCGGAACAAGGTGTCTCAGCGATCAGGGTCGGCCCGAAGGAACCGGGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGACGAAGAGATAGGATTAATGAGAAGATGAAAGCTTTGCAACAACTCATACCTCATAGTAGTAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCTCTTCAGTTACAACTTCAGGTAATGTGGATGGGATCTGGCATGACACCAATGATGCTTCCTGGATTTCAACACTATATGTCACAAATGGGAATGGGAATGACAGCACCTTCATTTCCTCCGCTTCAAAATCCGATGCAATTGCAGAGAATACCTCTCGATCAATCCGTACAAACGCCGAACCAGACATTAATGTGCCCAAATCCTATTTTAGGTGCCTTTAATTACCAAAATCAGATACAAAATCCGGCTCTTTCGGACCAATATGCACGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAGTATGTACAGATATGGTCCCCAAGGAGTTCAACAAACTCAAGCAATGATTCCACCAAGCAATAGCAGTGGACCTATTAGGGGAGTAGTAAACGTTGATGATTCTGTAAGTGGAAAAATGGGTAGGCCACTAACATAA 1608 0.4017 MNDSVSEWNFESDTYVTNQKKSIGLDHELVELLWQNGQVVLHSQTNRKPITSRHVQKNLQSTTLRTNETFGSSSNLIQDDETVSWIHYPLEDPLEQELCSNLLSELSPCDDVVESYKQIRNFEEGKFSKLDASSDPHANINSQPSNLKPSFVQEFSKPDQRFHHAPDSSHKILNFSHFSRPPNVSSVTGKGDAHFRDKVTSGNLSQGDIRECSAMTVVSSYCGSNHIPQDQDVSRVSSNGVWNTTLSAEPKPVKDDIHKTIPRHEKGKSEMIEPTVTSSSGGSGSSLGKTSSLSTRSHGQKRKIIDVEDSVEQSEDTELKSAVRNKVSQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMTPMMLPGFQHYMSQMGMGMTAPSFPPLQNPMQLQRIPLDQSVQTPNQTLMCPNPILGAFNYQNQIQNPALSDQYARYMGYHLMQNASQPMSMYRYGPQGVQQTQAMIPPSNSSGPIRGVVNVDDSVSGKMGRPLT 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00869 535 MobiDBLite consensus disorder prediction 508 535 - -
Car05g00869 535 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Car05g00869 535 Pfam Helix-loop-helix DNA-binding domain 342 388 IPR011598 GO:0046983
Car05g00869 535 PANTHER TRANSCRIPTION FACTOR PIF5 1 513 - -
Car05g00869 535 MobiDBLite consensus disorder prediction 299 323 - -
Car05g00869 535 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 513 IPR031066 -
Car05g00869 535 CDD bHLH_AtPIF_like 338 401 - -
Car05g00869 535 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 404 IPR036638 GO:0046983
Car05g00869 535 MobiDBLite consensus disorder prediction 261 342 - -
Car05g00869 535 Gene3D - 333 394 IPR036638 GO:0046983
Car05g00869 535 MobiDBLite consensus disorder prediction 272 298 - -
Car05g00869 535 Coils Coil 344 364 - -
Car05g00869 535 SMART finulus 344 393 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00869 Car-Chr5 47015070 47019473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00869 8 514 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.249 1.14e-60 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car05g00869 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00869 K16189 - gmx:100784531 728.013