Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00865 ATGACAAGTTTGATTCTCAGAAGATCCTCTTCCATATTCTCACGCCGTTTCTTCGCCGCCGTTACTTCCGTCGAGCAACTATCGCACCGTTACCCCAGCCTCGCACTGTCCTCCACCTTCTATGGTAAAGGAGACAGGGCGTTTCACGCGAAATCTGGACCGTTGAACTTCCACTCGTCGCTGGTTTCTCGTGGTGCGCAACTTGCTGTGGATTACGATCATGCGGACGAAGGTTGCAGTGCGAATGGTGAAGGACTGGAGGTTGCTAAGCTTGGGATATCTCGGGAGATTGTTAATGCTCTTGCTAAGAAAGGGATTGCGAAGCTCTTCCCCATTCAGAAAGCTGTGCTGGAACCTGCTATGCAAGGGAGGGATATGATTGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGATAAGATTATTCAGTTTAATGCTAAGCATGGGAAAAGAAGGGATCCTTTGGCTTTGGTGTTGGCTCCAACCAGAGAACTTGCACGTCAGGTTGAAAAGGAATTCAATGAGGCTGCACCTAACTTGGAAACAGTTTGTCTTTATGGGGGTATGCCTATTCAACAACAAATCAGGCAACTTGATGGTGGCGTAGAGATTGTAGTGGGCACTCCTGGACGAGTTATTGATCTTCTCAAAAGGGGTTCACTGAAATTGAAGGATGTTAAATTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCGGTGGAGACAATCTTGCAAAAGATGCCTACAAAGCGTCAAACTCTTATGTTCTCAGCGACAATGCCTTCTTGGATAAAGAATCTTACACGCAATTACCTTAACAACCCCTTAACAATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGCTGTACTCTATTGCTTCCAATGGAAATGCTAAAGCGGGAATTCTGGCACCTCTTATAACCGAACATGCTAAAGGAGGAAAGTGTATTATTTTCACTCAAACCAAACGTGATGCTGATCGACTATCACATATTTTGGCAAAAAGTCTTAAATGTGAGGCCTTGCATGGAGATATTTCGCAAACTCAGAGAGAAAGAACTCTTACGGGATTTAGAAACAGCTATTTTAATGTTTTAGTGGCAACCGATGTTGCTTCGCGTGGGCTTGATGTACCAAATGTTGATCTTGTAATACATTACGAACTTCCAAATTCTTCAGAGATATTCGTTCATCGATCTGGACGAACAGGCCGTGCTGGGAAGAAAGGTACGGCCATTCTTGTCCACACAGAATCTCAATTCAGGGATTTAAAGACAATTGAGCGTGATGTTGGATGTACATTCACAGAGTTACCTAAGATTGCCGTTGAAGGTGGATCAGAAGACATGTTTGGTGGTCGATATGGTTCTTCAGGAGGTAGGGATCGTCGACCAGGCGGTGCAGGCTTTAGTGGTGGTTCTGGATTTGGCCGAACCGGCAATGGAAAATCCAGTCGTTATGGTGGCTCTGGTTCAAGTCAGTCAAGAGATGGGTTTGGGGGATTTTCTGGTAATTCCTCTGGGAAAACGGATAAATATGGTGGTGGAGGATTCAGCAGTTCAGGTCGTTCCAGTGGCTTCGGAAATTTCAGCTCAGGTCGATTTGGTGGCAGAAATTGA 1674 0.4492 MTSLILRRSSSIFSRRFFAAVTSVEQLSHRYPSLALSSTFYGKGDRAFHAKSGPLNFHSSLVSRGAQLAVDYDHADEGCSANGEGLEVAKLGISREIVNALAKKGIAKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGKRRDPLALVLAPTRELARQVEKEFNEAAPNLETVCLYGGMPIQQQIRQLDGGVEIVVGTPGRVIDLLKRGSLKLKDVKFVVLDEADQMLQVGFQEAVETILQKMPTKRQTLMFSATMPSWIKNLTRNYLNNPLTIDLVGDSDQKLADGISLYSIASNGNAKAGILAPLITEHAKGGKCIIFTQTKRDADRLSHILAKSLKCEALHGDISQTQRERTLTGFRNSYFNVLVATDVASRGLDVPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAILVHTESQFRDLKTIERDVGCTFTELPKIAVEGGSEDMFGGRYGSSGGRDRRPGGAGFSGGSGFGRTGNGKSSRYGGSGSSQSRDGFGGFSGNSSGKTDKYGGGGFSSSGRSSGFGNFSSGRFGGRN 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00865 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 446 IPR027417 -
Car05g00865 557 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 3 549 - -
Car05g00865 557 PANTHER RNA HELICASE 3 549 - -
Car05g00865 557 CDD SF2_C_DEAD 305 432 - -
Car05g00865 557 Pfam Helicase conserved C-terminal domain 320 425 IPR001650 -
Car05g00865 557 Gene3D - 313 466 IPR027417 -
Car05g00865 557 Pfam DEAD/DEAH box helicase 110 279 IPR011545 GO:0003676|GO:0005524
Car05g00865 557 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 291 IPR014001 -
Car05g00865 557 SMART helicmild6 345 425 IPR001650 -
Car05g00865 557 MobiDBLite consensus disorder prediction 495 550 - -
Car05g00865 557 CDD DEADc 97 292 - -
Car05g00865 557 SMART ultradead3 105 308 IPR014001 -
Car05g00865 557 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 469 IPR001650 -
Car05g00865 557 MobiDBLite consensus disorder prediction 467 557 - -
Car05g00865 557 Gene3D - 87 295 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00865 Car-Chr5 46830321 46835893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00865 91 457 Eukaryotic Initiation Factors Gene Family AT3G19760 33.962 1.41e-66 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00865 - - gmx:100802553 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00865 05 46830321 46835893 Car02g01944 02 49809470 49814259 PCT