LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g00849	ATGGAAGGAATAGCAACTGGGTCACGTGAAAGGAATAGTGGGTCTAAACCCTTAAAGAACCTAAATGGTCAAATCTGTCAAATATGTGGTGATACCATTGGATTAACTACCACCGGCAATGTCTTCGTTGCGTGCCACGAGTGTGCGTTCCCACTTTGTAATCCTTGTTATGAATACGAACGAAAAAATGTGAGCCAATCATGTCCGCAATGCAAGACTAGATACAAAAGTCACAAAGAGGGTACTCGAGTAAAGGGAGATGATGATGAAGATGATCTACGGAATGAGGTCAAGTATGGTTCTAAGACTGGATGGCAATGGGAAGAAGATGCTGATCTCTCTTCATCTTCTGGACATGATTCTCAACAAAATCTCCGTCTCGCAAATGGACAGCTGATATCTAGTGAGATTCCATGTGCTACTTCTGATACTCAATCTGTGCAAACTACATCAGGTCCTTTGGGTCAATCCGAAAATGTTCACTCACATCCCTACGTTGATCCAAAGCAACCAGGTCTTGAGAGTGACGAGGAGATCCGACGAGTACCTGAGATGGGAGGTGAATCTGCCGGAACCTCAGCTTCTCGTCCAGGCAATGGTTCAACTGCTGGTCCTGAACGCGCTCAGGGGGCCGTAGAGGGTCAAAAGAAGAGAGGGAGAAGCCCAGCTGACAAAGAAAGCAAACGGCTTAAGAGGCTACTGAGGAACAGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCATACTTGAGTGACTTGGAATCAAAAGTCAATGACTTAGAGAAGAAGAATTCAGAGCTTAAAGAAAAGCTTTCAACTTTGCAGAATGAGAATCAAATGCTGAGACAAATATTGAAGAACACAACAGCAAGTAGGAGAGGGAACAACAGTGGTACCAACAATGCTGATTGA	915	0.4459	MEGIATGSRERNSGSKPLKNLNGQICQICGDTIGLTTTGNVFVACHECAFPLCNPCYEYERKNVSQSCPQCKTRYKSHKEGTRVKGDDDEDDLRNEVKYGSKTGWQWEEDADLSSSSGHDSQQNLRLANGQLISSEIPCATSDTQSVQTTSGPLGQSENVHSHPYVDPKQPGLESDEEIRRVPEMGGESAGTSASRPGNGSTAGPERAQGAVEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLSDLESKVNDLEKKNSELKEKLSTLQNENQMLRQILKNTTASRRGNNSGTNNAD	304

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g00849	304	Pfam	Zinc-binding RING-finger	16	92	IPR027934	-
	Car05g00849	304	Gene3D	Single helix bin	247	288	-	-
	Car05g00849	304	MobiDBLite	consensus disorder prediction	141	158	-	-
	Car05g00849	304	PANTHER	TRANSCRIPTIONAL ACTIVATOR HAC1	140	294	-	-
	Car05g00849	304	MobiDBLite	consensus disorder prediction	141	249	-	-
	Car05g00849	304	ProSiteProfiles	Zinc finger RING-type profile.	26	72	IPR001841	-
	Car05g00849	304	SMART	brlzneu	224	288	IPR004827	GO:0003700\|GO:0006355
	Car05g00849	304	CDD	bZIP_HY5-like	229	280	-	-
	Car05g00849	304	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	8	99	IPR013083	-
	Car05g00849	304	Coils	Coil	223	292	-	-
	Car05g00849	304	MobiDBLite	consensus disorder prediction	211	249	-	-
	Car05g00849	304	Pfam	bZIP transcription factor	225	286	IPR004827	GO:0003700\|GO:0006355
	Car05g00849	304	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	226	289	IPR004827	GO:0003700\|GO:0006355
	Car05g00849	304	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	231	246	IPR004827	GO:0003700\|GO:0006355
	Car05g00849	304	MobiDBLite	consensus disorder prediction	170	184	-	-
	Car05g00849	304	SUPERFAMILY	RING/U-box	11	98	-	-
	Car05g00849	304	SUPERFAMILY	Leucine zipper domain	228	286	IPR046347	GO:0003700\|GO:0006355
	Car05g00849	304	CDD	mRING-HC-C4C4_CesA_plant	24	74	-	-
	Car05g00849	304	PANTHER	TRANSCRIPTIONAL ACTIVATOR HAC1	140	294	IPR044280	GO:0000981\|GO:0045944

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g00849	Car-Chr5	45824100	45829221	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g00849	164	285	bZIP Transcription Factor Family	AT5G11260	69.106	5.81e-51	164

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Car05g00849		zf-UDP	7.4e-40	CL0229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g00849	K10999		-	cam:101493489	614.379