Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00841 ATGTTGTTATTTGTATCATTAGCAAATGGTGTTCCACTAGAAAACATTTGCGATTATACCATAGATCCTATTTATTGTAAAACCGTATTTGTTAATCAAAATGGAAATATCTATGACTTTGGTCGTATTTCTATTCGAAAATCTATATCTCAATCTCGTAAGTTCATTAACTCAATAAACTCATATCTTCAAAGTAGTTCATCTTTGTCTCAGTCCACAGTTCGTGCTCTCGAAGATTGTCGATTTCTTGCTGACTTAAGTTTTGAATATTTATCAAACACTTATACCACAACAAATCAATCTAGTAATGTTCTTCCAATTTCTCAAGCTGAAGATTTTGAAACTTTCCTAAGTGCTGTTTTGACTAACCAACAAACATGTTTGGACGGTCTAAACACTATAAGTTCTGATCAAAGAGTGAAGAATGATTTATCATCATCTCTCTCTGATGATATAAAGCTTCATAGTGTAACTCTAGCCTTGTTCAAAAAAGGTTGGGTTCCCGAGAAAAAAATAAGAACATCATGGCCACAAAATGGTAGACATTTGAATTTCAAAAATGGACGTTTACCATTGAAAATGTCAAATAGAGCACGTGCTATTTATGATTCAGCTAAACACCATGGAAGAAAACTACTTCAAACTACCACTGATGAAGATAGTGTTGTGGTGAGTGATGTTGTGGTTGTTAGTCAAGATGGAAGTGGAAACTTTACAACTATCAATGATGCAATAGCTGCTGCACCGAATAACACCGTTGCCAGTGATGGATACTTCTTCATTTTTATCACTGAAGGTGTGTATCAAGAATATGTATCTATAGACAAAAAGAAAAAATACTTGATGCTTGTGGGAGAAGGAATCAATCGAACAATTATCACAGGAAATCACAACGTTAACGATGGTTTCACAACATTCAACTCAGCCACATTTGCGGTGGTTGGTCAAGGTTTTGTGGCAGTTAACATAACATTTCGCAATACAGCCGGACCAGGAAAACACCAAGCAGTTGCATTGAGAAGTGGAGCAGATATGTCCACTTTCTATAGTTGTAGCTTTGAAGGATATCAAGACACATTGTATACACATTCTTTAAGACAATTTTATAGAGAATGTGATATTTATGGAACAGTTGACTTCATATTTGGAAATGCAGCAGTTGTTTTACAAAATTGTAACATTTATCCCCGCCTTCCTCTCACTGGACAATTCAACACCATCACAGCTCAAGGTCGAACTGACCCAAATCAAAACACTGGAACTTCTATACAGAATGCAACTATTAAAGCAGCTGACGATTTAGCTCCTAAAGTTGGAACTGTTCAAACATACCTAGGGAGACCATGGAAGGAATACTCAAGGACAATTTTCATGCAATCTTTCATGGATAGTTTCATAAATCCTGCTGGATGGCATGATTGGAATGGTTCTTTTGCGTTGAGCACTTTGTACTATGCAGAATATAATAACAGAGGATCAGGTTCAAGCACTGTGAATCGAGTGACGTGGCCTGGTTATCACGTTATTAATGCTACTGATGCTGCCAATTTCACTGTGTCTAACTTCTTGAGTGGGGATGATTGGATTCCTCCAACTGGTGTCCCATATTTGAGTGGATTGATTTAG 1626 0.3659 MLLFVSLANGVPLENICDYTIDPIYCKTVFVNQNGNIYDFGRISIRKSISQSRKFINSINSYLQSSSSLSQSTVRALEDCRFLADLSFEYLSNTYTTTNQSSNVLPISQAEDFETFLSAVLTNQQTCLDGLNTISSDQRVKNDLSSSLSDDIKLHSVTLALFKKGWVPEKKIRTSWPQNGRHLNFKNGRLPLKMSNRARAIYDSAKHHGRKLLQTTTDEDSVVVSDVVVVSQDGSGNFTTINDAIAAAPNNTVASDGYFFIFITEGVYQEYVSIDKKKKYLMLVGEGINRTIITGNHNVNDGFTTFNSATFAVVGQGFVAVNITFRNTAGPGKHQAVALRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLTGQFNTITAQGRTDPNQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKEYSRTIFMQSFMDSFINPAGWHDWNGSFALSTLYYAEYNNRGSGSSTVNRVTWPGYHVINATDAANFTVSNFLSGDDWIPPTGVPYLSGLI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00841 541 SMART PMEI_2 8 161 IPR006501 GO:0004857
Car05g00841 541 Gene3D - 221 540 IPR012334 -
Car05g00841 541 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 14 164 IPR035513 -
Car05g00841 541 Pfam Pectinesterase 228 526 IPR000070 GO:0030599|GO:0042545
Car05g00841 541 ProSitePatterns Pectinesterase signature 2. 374 383 IPR033131 -
Car05g00841 541 Gene3D Invertase/pectin methylesterase inhibitor family protein 12 164 IPR035513 -
Car05g00841 541 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 4 539 - -
Car05g00841 541 SUPERFAMILY Pectin lyase-like 223 539 IPR011050 -
Car05g00841 541 PANTHER PECTINESTERASE 4 539 - -
Car05g00841 541 CDD PMEI-like_3 16 166 - -
Car05g00841 541 Pfam Plant invertase/pectin methylesterase inhibitor 14 160 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00841 Car-Chr5 45482456 45484195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00841 16 541 Carbohydrate Esterase AT4G02330 61.510 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00841 K01051 - gmx:100813051 819.305