Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00840 ATGTCACGGTCTGATACGATTATGACAACTACGACGAGTActtcggatctgaacagagctggtaccgttgaaagagacattgaacaggccattactgctttaaagaaaggggcttatttgcttaagtatggaagaagggggaagcccaagttttgcccctttcgactttctaatgacgaatctgttttgatatggttctcagggaaagaagagaagcaccttaaactgagccataagcgcctcaaattaactaacgtttctagaattatatctggacaacgcacgCCTATCTTTCAAAGATATCCACGGCCGGCAAAGGAATACCAGTCATTTTCACTTATCTACAATGATAGATCATTGGACCTGATTTGCAAGGACAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTGAAAGCATTGATTTCACGGAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTTTTCCATCTGAAGCTAGTAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTACATTCTCCATTTGTTACTAACGAAAGCTTGCAAAAGGATAGTGGTGAACACCTTCGCCTTCATAGCCCATTTGAGAGCCCCCCTGAGAATGGTTTGGATAAAGTATTTTCTGATGCGGTTTATTATCCTATTCCTCCGAAGGGTTTGTACCCACCAGATTCAGCTAGTGGTTCAGTCCACTCTGTGTCATCAGGAGGATCAGATAGTGTGCATGGTCACATGAAGACAATGCCTTTGGATGCTTTTAGAGTTAGTCTATCAAGTGCCGTTAGCTCTTCTAGCCAAGGTTCTGCCCATGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCATAGGTGATGGTGTTCTGGGTGGTGGGGCTCACCGGGTTGGGAGTTGTTTGGATGCCAAAATGGATTCACTATTGCCAAAAGCCTTGGAATCAGCAGTAGTTTTAGATGTACAGAATATTGCTTGTGGTGGGCAACATGCAGCCTTAGTGACAAAACAAGGTGAGATTTTCTCTTGGGGAGAAGAATCTGGAGGCAGGCTCGGGCATGGAGTTGATTCTGATGTTCCCTATCCAAAGCTCATTGAATCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACTTGTGCTGTGACACTTTCCGGTGATCTTTATACATGGGGTGATGGAACTTACAATTATGGCCTTCTGGGGCATGGAAATCGGGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCCTTGGAGGGCATACATGTTTCATCTATTTCTTGTGGTCCTTGGCACACTGCTGTTGTAACCTCTTCTGGGAAGTTATTTACTTTTGGTGATGGTACATTTGGTGTTTTGGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCAAGGGAAATAGAGTCGTTAAAGGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTAATGGTTGGAAATTCTAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGCGATGGAGACAAAGGTAGACTTGGGCATGGTGATAAGGAATCCAAACTTGTTCCGACCTGTGTTGTAGCACTTTCCGAACCTAACTTTTGTCAAGTTGCTTGTGGGCATAGTATTACTGTCGCACTTTCTAGAGCAGGCCATGTATATACCATGGGAAGTTGTGTCTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAACTACCAACTCGCATTGAAGGGAAGCTTTCAAAGAGTTTTGTGGAGGAAATAGCCTGTGGTGCTTATCATGTTGCGGTTTTAACTTCGAGGACTGAAGTTTACACTTGGGGGAAAGGTTCAAATGGTCGTTTAGGCCATGGGGATACTGATGATAGAAACTCCCCAACATTAGTGGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGTGGTACAAATTTCACTGCTGCCATATGCCTGCATAAGTGGGTATCTGGTGTTGACCAATCCATGTGTTCTGGCTGCCGTGTGCCATTCAATTTCAAGAGGAAGCGCCACAATTGTTATAATTGTGGACTCGTTTTTTGTCATTCATGCAGCAGTAAGAAGTCTGTTAAGGCTTCAATGTCACCAAATCCTAACAAACCTTATCGTGTCTGTGATAACTGTTTTAACAAAATAAGGAAAGCTACAGAAACTGATGGTTCATCCCATAATTCTATTAGCAGAAGAGGAAGTATTAATCAAGGGTCACTTGAGTCTATTGGTAAGGATGATAAATTGGATTCCAGATCTCAAAATCAATTTGCTAGGTTCTCTTCAACGGAATCCTTGAAACAAGTAGACAGAATATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGTAGCCGTGTCTCGCCTGTTCCAAATGGAGGTTCACAATGGGGGGCAATGCATATTTCTAAATCTTCTAATCCTGTATTTGGTTCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGGCGGACTAGTCCACCACGGTCAACTACTCCAACCCCGACACTAGGAGGACTGACAACCCCAAAGATAGTTGTGAATGATACTAAGAGAACTAACGAAAGCCTCAGTCAGGAGGTTGTTAAATTAAGATCACAGGTGGAAAACTTAACTCGGAAATCCCAGCTCCAAGAAGTCGAGTTAGAAAAAACAACTAAACAACTGAAAGAAGCAATAGCATTTGCCAGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCGCTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTGCCCGTAGGAGCAGCTAGGAATGTCAGATCACCCTCTGACTCCAATCCTGATTACAATGACTTAAACAATTCTTCCATTGATCGACTGAATATTCAAGCAACAAGTCCAAAATCGGAATTAACTGGATCAAATAACCAGTTATTGTCAAATGGATCAAGCACTGTCGCCGATCGTACTGCTGGTCATTGTAAACATAGTCAAACTGATGCAGCTAGCAGAAATGGGAGCAAAACAAAGGATAACGAGTCTCGTAATGAGACCGAATGGGTTGAGCAAGACGAGCCTGGTGTATATATCACTCTAACTTCCCTATCTGGTGGTGCAATAGATCTTAAGAGGGTTCGATTCAGTCGAAAGCGGTTTAGTGAAAAACAAGCAGAACATTGGTGGGCTGAGAATCGGGCAAGAGTATATGAACAATACAATGTGCGCATGATAGACAAGTCGACCATTGGTATTGGGAGTGAGGACCTGGCTCATTGA 3354 0.4025 MSRSDTIMTTTTSTSDLNRAGTVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHKRLKLTNVSRIISGQRTPIFQRYPRPAKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGFPSEASSPRTYTRRSSPLHSPFVTNESLQKDSGEHLRLHSPFESPPENGLDKVFSDAVYYPIPPKGLYPPDSASGSVHSVSSGGSDSVHGHMKTMPLDAFRVSLSSAVSSSSQGSAHDDGDALGDVFIWGEGIGDGVLGGGAHRVGSCLDAKMDSLLPKALESAVVLDVQNIACGGQHAALVTKQGEIFSWGEESGGRLGHGVDSDVPYPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNRVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGKLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVALSEPNFCQVACGHSITVALSRAGHVYTMGSCVYGQLGNPQADGKLPTRIEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDTDDRNSPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRVPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMSPNPNKPYRVCDNCFNKIRKATETDGSSHNSISRRGSINQGSLESIGKDDKLDSRSQNQFARFSSTESLKQVDRISSKKNKKLEFNSSRVSPVPNGGSQWGAMHISKSSNPVFGSSKKFFSASVPGSRIVSRATSPISRRTSPPRSTTPTPTLGGLTTPKIVVNDTKRTNESLSQEVVKLRSQVENLTRKSQLQEVELEKTTKQLKEAIAFASEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVRSPSDSNPDYNDLNNSSIDRLNIQATSPKSELTGSNNQLLSNGSSTVADRTAGHCKHSQTDAASRNGSKTKDNESRNETEWVEQDEPGVYITLTSLSGGAIDLKRVRFSRKRFSEKQAEHWWAENRARVYEQYNVRMIDKSTIGIGSEDLAH 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00840 1117 ProSiteProfiles BRX domain profile. 1044 1099 IPR013591 -
Car05g00840 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 281 342 IPR000408 -
Car05g00840 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 514 565 IPR000408 -
Car05g00840 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 566 614 IPR000408 -
Car05g00840 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 394 446 IPR000408 -
Car05g00840 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 619 666 IPR000408 -
Car05g00840 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 343 391 IPR000408 -
Car05g00840 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 513 562 IPR000408 -
Car05g00840 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 449 498 IPR000408 -
Car05g00840 1117 SUPERFAMILY FYVE/PHD zinc finger 670 740 IPR011011 -
Car05g00840 1117 Pfam Unstructured region between BRX_N and BRX domain 971 1037 - -
Car05g00840 1117 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 27 1103 - -
Car05g00840 1117 MobiDBLite consensus disorder prediction 1032 1047 - -
Car05g00840 1117 Pfam Transcription factor BRX N-terminal domain 931 963 IPR027988 -
Car05g00840 1117 Pfam FYVE zinc finger 670 736 IPR000306 GO:0046872
Car05g00840 1117 CDD PH_PLC_plant-like 25 142 - -
Car05g00840 1117 PRINTS Chromosome condensation regulator RCC1 signature 345 361 IPR000408 -
Car05g00840 1117 PRINTS Chromosome condensation regulator RCC1 signature 613 634 IPR000408 -
Car05g00840 1117 PRINTS Chromosome condensation regulator RCC1 signature 326 339 IPR000408 -
Car05g00840 1117 PRINTS Chromosome condensation regulator RCC1 signature 395 411 IPR000408 -
Car05g00840 1117 PRINTS Chromosome condensation regulator RCC1 signature 436 452 IPR000408 -
Car05g00840 1117 PRINTS Chromosome condensation regulator RCC1 signature 555 573 IPR000408 -
Car05g00840 1117 PRINTS Chromosome condensation regulator RCC1 signature 452 466 IPR000408 -
Car05g00840 1117 MobiDBLite consensus disorder prediction 851 875 - -
Car05g00840 1117 Gene3D - 510 682 IPR009091 -
Car05g00840 1117 MobiDBLite consensus disorder prediction 741 772 - -
Car05g00840 1117 MobiDBLite consensus disorder prediction 965 1031 - -
Car05g00840 1117 MobiDBLite consensus disorder prediction 151 205 - -
Car05g00840 1117 MobiDBLite consensus disorder prediction 156 186 - -
Car05g00840 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 436 446 IPR000408 -
Car05g00840 1117 MobiDBLite consensus disorder prediction 742 761 - -
Car05g00840 1117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 683 743 IPR013083 -
Car05g00840 1117 SUPERFAMILY RCC1/BLIP-II 280 671 IPR009091 -
Car05g00840 1117 CDD FYVE_like_SF 679 732 - -
Car05g00840 1117 Gene3D - 229 404 IPR009091 -
Car05g00840 1117 Gene3D - 405 508 IPR009091 -
Car05g00840 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 395 449 IPR000408 -
Car05g00840 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 618 669 IPR000408 -
Car05g00840 1117 SMART fyve_4 668 737 IPR000306 GO:0046872
Car05g00840 1117 SMART PH_update 34 144 IPR001849 -
Car05g00840 1117 Pfam Pleckstrin homology domain 28 141 IPR001849 -
Car05g00840 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 488 498 IPR000408 -
Car05g00840 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 566 617 IPR000408 -
Car05g00840 1117 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 674 736 IPR017455 -
Car05g00840 1117 SUPERFAMILY PH domain-like 26 141 - -
Car05g00840 1117 Gene3D - 25 150 IPR011993 -
Car05g00840 1117 MobiDBLite consensus disorder prediction 959 1047 - -
Car05g00840 1117 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 27 1103 - -
Car05g00840 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 329 339 IPR000408 -
Car05g00840 1117 Pfam Transcription factor regulating root and shoot growth via Pin3 1043 1098 IPR013591 -
Car05g00840 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 343 394 IPR000408 -
Car05g00840 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 450 501 IPR000408 -
Car05g00840 1117 ProSiteProfiles PH domain profile. 33 142 IPR001849 -
Car05g00840 1117 Coils Coil 880 956 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00840 Car-Chr5 45439685 45456889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00840 940 1108 Major Intrinsic Protein MIP AT1G31880 30.645 2.37e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00840 - - gmx:100791947 1883.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00840 05 45439685 45456889 Car05g00840 05 45439685 45456889 ECH
Car05g00840 05 45439685 45456889 Car02g01936 02 49726510 49733690 PCT