Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00839 ATGGACGAACCAAATGAGATGCAGTTGGAAGACAATAAAACCTCTATGGAGAAAAATATTAAAAGAAAGCTCAAAACACCTGCTCAACTTATGGCGTTGGAAAATTTTTATAATGATCACAAATACCCCACAGAGGAAATGAAATTTGAGCTCGCTAATGAATTAGTGTTGACGGAAAAGCAAATCTCGGGATGGTTTTGCCACAGAAGGTTGAAAGATAAGAGATTGATGAGAGATGAAGTATGTGCTAATAATGGACGACAAGATCGTTCAAGTGGTGTTGTTCAGGATCGTGGCAGTGGACTAGGGCAGGATTCATGTGGAAGCACTAAGCACGGTGGTGACTATAGGTATTTAGATCCTAAAGAGGTTGAGAGCAATGGTGTCTATAATCACGAATTGTCGGTTGCAAATATGAACTACGCACATACAAACCTTTATACAGAAAATGATAGTGAAACGGATAATACATCATCTGAGAACAGCTCATCTTTGCAAGAACGGTTGTTTCTTCAAGGACATGATCCATATGATACGGAGCCCTCTCGATACATAACACAAAATGGAGCTCTTCCACCATTAAATCCCAAGGGATATAAACCATCGGGATATTTAAAACTGAAGGGAGAGATAGAACATGCTGCTGTAACTGCTGTTAAGAATCAGTTAGGAAGGAATTATCTGGAAGATGGTCCACTACTTACTGTAGATTTTGATACAATCCCTCCAGAGGCATTTGAATGTCAAACTGCAAATTCAATTAAAGAATCATACCATGTTGCAAACCCCTCTCTTGCAAAAAGGCAATCCAATCTTAACTCTAGATATGATCCATATTTTAACAAATCAAGTTCACAAGATTTACAAATGGAAGGAGGTGACTTTGGCCCCTCTCATGGTTCCGATTTCCAGGATAAGCAGGATAAGAAATCCCGCCAGCGTATAAAACAAAGAACAACTTTTCAAGGTCGTGCGGTTCGCACCAATCCTTTGCCTGGCAAGAGCTTTCCCCCAGATTTGTACATAGACTCGACTGTGGAAGCACCTGCTTATAATAGCACTAGAAATCATAGAATAGGCGCTAAGCACGGTGTTGAGAGAATGAAATCCGATTCTGCTTCTAATCCTAATGATCTCTATGAAGAGAATAATAACCCTGCGATTGAGCAGGAAGGTCCACTACTACATGACTACAATAACAGCAATGTGAAGAATGTACGAACGAGTGAATATGTAAAATCTAAACCTTCAAATTCAATACGTAATTCTCGAATTTCTATGGACACTGAAGAAAGAGGGCTTTCTGAAAGAATGGCTAAGGAAGAAAAGCGTAATGGCATTAGAAAGGTTAAAAAACCGTCTCATGAATCAGATGGAGGAAGGATACCTTCAAAAGAAACCATGGTTGCAAAGCGAGCTAAAGTCGATCTACTTCGTCAATATGATATTAAACAAGAACCTGTTGCTGAGATTGAACCAAGGAAAACTCAGAGATCTGCTGTGGAGATGCCATCTAGCTTTAGTGAGGATGAAACTGCTGAAACCAGTTCCTCACTGGATTGA 1563 0.3973 MDEPNEMQLEDNKTSMEKNIKRKLKTPAQLMALENFYNDHKYPTEEMKFELANELVLTEKQISGWFCHRRLKDKRLMRDEVCANNGRQDRSSGVVQDRGSGLGQDSCGSTKHGGDYRYLDPKEVESNGVYNHELSVANMNYAHTNLYTENDSETDNTSSENSSSLQERLFLQGHDPYDTEPSRYITQNGALPPLNPKGYKPSGYLKLKGEIEHAAVTAVKNQLGRNYLEDGPLLTVDFDTIPPEAFECQTANSIKESYHVANPSLAKRQSNLNSRYDPYFNKSSSQDLQMEGGDFGPSHGSDFQDKQDKKSRQRIKQRTTFQGRAVRTNPLPGKSFPPDLYIDSTVEAPAYNSTRNHRIGAKHGVERMKSDSASNPNDLYEENNNPAIEQEGPLLHDYNNSNVKNVRTSEYVKSKPSNSIRNSRISMDTEERGLSERMAKEEKRNGIRKVKKPSHESDGGRIPSKETMVAKRAKVDLLRQYDIKQEPVAEIEPRKTQRSAVEMPSSFSEDETAETSSSLD 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00839 520 MobiDBLite consensus disorder prediction 86 118 - -
Car05g00839 520 MobiDBLite consensus disorder prediction 485 520 - -
Car05g00839 520 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Car05g00839 520 MobiDBLite consensus disorder prediction 410 468 - -
Car05g00839 520 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Car05g00839 520 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 520 - -
Car05g00839 520 CDD homeodomain 21 75 IPR001356 GO:0003677
Car05g00839 520 MobiDBLite consensus disorder prediction 276 320 - -
Car05g00839 520 MobiDBLite consensus disorder prediction 276 291 - -
Car05g00839 520 MobiDBLite consensus disorder prediction 410 424 - -
Car05g00839 520 MobiDBLite consensus disorder prediction 425 468 - -
Car05g00839 520 Gene3D - 10 92 - -
Car05g00839 520 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Car05g00839 520 MobiDBLite consensus disorder prediction 86 107 - -
Car05g00839 520 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 520 - -
Car05g00839 520 MobiDBLite consensus disorder prediction 301 315 - -
Car05g00839 520 SMART HOX_1 18 80 IPR001356 GO:0003677
Car05g00839 520 MobiDBLite consensus disorder prediction 499 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00839 Car-Chr5 45405222 45410578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00839 6 520 Homeobox Transcription Factor Family AT4G03250 40.700 4.11e-77 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Car05g00839 Homeodomain 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00839 - - mtr:MTR_3g045830 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00839 05 45405222 45410578 Car05g00839 05 45405222 45410578 ECH
Car05g00839 05 45405222 45410578 Car02g01935 02 49709569 49714718 PCT