Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00833 ATGGCTGACCATGGCATGCAAATTTCTCTATCAAGCTCATCAAGCGACTCATCAGATCAAGAAACCCATTTCACCACACCAACGAACCCAACCGCCGCCGGATCCTCCCACCAAAAAACACCAGCCACCGTCGATTCCCCCAACCAACAACCCACTTCACCACCTTACAAAAAGCCACGTGGCAGACCACCAGGATCTAAAAACAAACCAAAACCGCCTCTTGTAATAACACAAGACAACGAACAGGCGATGAAACCAGCAGTCATTGAAGTGGCAGCCGGTACAGATGTCCTTGAAGCCGTCATACAGTTCGCAGTCCGCCTTGGTTCGTGTCTCACAATTCTCAGCGGCTCAGGTACAATTGCTAATGCTACACTTCATTACCCTCTTTGTCGTTCACCTGCTTTCACTCTTCATGGACCTTTTTCTTTGTTGACTTTGACTGGTACTTTTTTGTACcctccttcacctcttccaccaccaccacctccaccgccgccgcctcTNNNNNNNNNNCTTTCCCTTCCTTTTGCTTCGGCTTCTTCGTCTTCGAATCCGAATCCGTTACCGCCGGCGGCGCCATCGACATTTGGTATTACTCTTGCTGGTATGCAGGGGCAAATTTTTGGTGGGATTATTGGTGGAAAAGTTGTTGCTGGTGGTGATGGTGTGAAAATTGTGGCTTCTTTGTTTAAGAATCCAGAACTTCATAGAGCTGGTGGTGTTTTAATTGAAGCTGATGatgatggtgatgatgataataatggtaatgatggtaatggtggtggcggtggtggtggtgatccaggtgctggtagtagtggtggtggtggtggtggAAATGAGGATGTGTCTGGTTTCAATGCTCCTAATCCAATGCAGATGAATCTACCTCCTCATGCTGATCCTAACTTCATGCAGTGGAATCACCCTCGTCCTCCTAATTACTGA 951 0.3912 MADHGMQISLSSSSSDSSDQETHFTTPTNPTAAGSSHQKTPATVDSPNQQPTSPPYKKPRGRPPGSKNKPKPPLVITQDNEQAMKPAVIEVAAGTDVLEAVIQFAVRLGSCLTILSGSGTIANATLHYPLCRSPAFTLHGPFSLLTLTGTFLYPPSPLPPPPPPPPPPXXXXLSLPFASASSSSNPNPLPPAAPSTFGITLAGMQGQIFGGIIGGKVVAGGDGVKIVASLFKNPELHRAGGVLIEADDDGDDDNNGNDGNGGGGGGGDPGAGSSGGGGGGNEDVSGFNAPNPMQMNLPPHADPNFMQWNHPRPPNY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00833 316 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 313 IPR014476 GO:0003680
Car05g00833 316 Gene3D - 85 247 - -
Car05g00833 316 CDD DUF296 88 152 IPR005175 -
Car05g00833 316 ProSiteProfiles PPC domain profile profile. 81 257 IPR005175 -
Car05g00833 316 MobiDBLite consensus disorder prediction 154 172 - -
Car05g00833 316 MobiDBLite consensus disorder prediction 1 51 - -
Car05g00833 316 MobiDBLite consensus disorder prediction 154 197 - -
Car05g00833 316 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 238 - -
Car05g00833 316 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 229 IPR005175 -
Car05g00833 316 MobiDBLite consensus disorder prediction 1 81 - -
Car05g00833 316 MobiDBLite consensus disorder prediction 242 316 - -
Car05g00833 316 MobiDBLite consensus disorder prediction 52 70 - -
Car05g00833 316 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 7 313 - -
Car05g00833 316 PIRSF ESCAROLA 1 168 IPR014476 GO:0003680
Car05g00833 316 PIRSF ESCAROLA 175 314 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00833 Car-Chr5 45163889 45165191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00833 35 289 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.615 1.60e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00833 - - cam:101503818 263.848