Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00819 ATGATGAATATGAAAGTTGGAAGGAGTAGAACTGAAAGAATCAGTGGGACAACATGCGCCTATTGGCTCGCTGGGAGATGCAACAGAAATCCTTGTAGGTTTTTACACACTGAAACATCATACCCATCCACTGCTTCTTATCATAATGCAAGGAAGTTCCATTCATTCTCTAAGTTTGAGAAATCGCGTCCTAAGCATAATCCTAATACCATCTTGAATAGAAATAGTGAAAAGACACAAGTCGCTGACAAGTCTTCACCAAGTATCTGCAAATATTGGGTGAATGGAAACTGTGTTCACGGTGATCGGTGCCGGTATTTACATCGTTGGTCTTATGGTGATGGATTTGCCACATTAACAAAGCTTCAAGGACACAAGAAGCTCGTCACTGGAATTGTACTTCCGGTTGGATCAGACAAACTTTATTCTGGCAGCACTGATGGGACACTTAGGACATGGGACTGCAATTCTGGTCAATGTACTAATTTGATGAATCTTGGTGCTGAAGCTACCTCTTTGATCAGTGAGGGTCCATGGATTTTTGTTGGTTTGACAAAAGCCGTCATGGCATGGAATATTCAAACTGCTTCACATTTTACTCTTGATGGACCTAAGGGGCGAATCCTTGCCATGACTGTTGGTAATGATACACTTTTTGCTGGAGCAGAGGATGGCATTATATCTGCATGGAGAGGCAGCTCTACAGCTGATTCCCCTTTTGAACTGGTTGCATCACTATGTGACCACACTAAATCTGTGGTTTGCCTGGCTGTTGGAGGCGACAAGATGTTGTGCTCGGGATCTAAGGATCAAAGCATTAAGGTTTGGGACCTTGACACGTTAGAGTGTAAAATGACACTCAATGCACATACAGATGCAGTCACATCCCTTATATGGTGGGACAATTACTTACTATCTGGTTCATCTGACTGCACTATCCATGTCTGGGCGGCCACCGAAGAGAGAACTTTGAAAGTGATATATTCGCACAATGTAGAAAGTGATGTTGTCGCACTATCTGGGATGGCTGATCCAGAAGCTAAGCCTATACTGCTCTGCTCTTGTACAGACAATTCAGTTCGCCTCTACGAACTGCCATCATTTGCAGAGAGGGGTAGATTATTTGCAAAGAAAGAAGTTGGATCATTTGAGACAGGTCCTGGTGGACTATTCTTCACCGGAGATAGAACTGGTTTGCTGATGGTCTGGAAATGGTTGGAAGAGCCCAGAGTGGAAGCAGCATCCTCTTGA 1251 0.4373 MMNMKVGRSRTERISGTTCAYWLAGRCNRNPCRFLHTETSYPSTASYHNARKFHSFSKFEKSRPKHNPNTILNRNSEKTQVADKSSPSICKYWVNGNCVHGDRCRYLHRWSYGDGFATLTKLQGHKKLVTGIVLPVGSDKLYSGSTDGTLRTWDCNSGQCTNLMNLGAEATSLISEGPWIFVGLTKAVMAWNIQTASHFTLDGPKGRILAMTVGNDTLFAGAEDGIISAWRGSSTADSPFELVASLCDHTKSVVCLAVGGDKMLCSGSKDQSIKVWDLDTLECKMTLNAHTDAVTSLIWWDNYLLSGSSDCTIHVWAATEERTLKVIYSHNVESDVVALSGMADPEAKPILLCSCTDNSVRLYELPSFAERGRLFAKKEVGSFETGPGGLFFTGDRTGLLMVWKWLEEPRVEAASS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00819 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 122 163 IPR001680 GO:0005515
Car05g00819 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 287 326 IPR001680 GO:0005515
Car05g00819 416 Pfam Zinc finger domain 90 108 - -
Car05g00819 416 Gene3D - 17 108 - -
Car05g00819 416 SUPERFAMILY CCCH zinc finger 87 109 IPR036855 GO:0046872
Car05g00819 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 246 280 - -
Car05g00819 416 MobiDBLite consensus disorder prediction 58 80 - -
Car05g00819 416 Gene3D - 109 174 IPR015943 GO:0005515
Car05g00819 416 Gene3D - 179 414 IPR015943 GO:0005515
Car05g00819 416 SMART WD40_4 367 404 IPR001680 GO:0005515
Car05g00819 416 SMART WD40_4 239 277 IPR001680 GO:0005515
Car05g00819 416 SMART WD40_4 320 364 IPR001680 GO:0005515
Car05g00819 416 SMART WD40_4 194 231 IPR001680 GO:0005515
Car05g00819 416 SMART WD40_4 280 317 IPR001680 GO:0005515
Car05g00819 416 SMART WD40_4 115 154 IPR001680 GO:0005515
Car05g00819 416 ProSitePatterns Trp-Asp (WD) repeats signature. 264 278 IPR019775 -
Car05g00819 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 286 IPR001680 GO:0005515
Car05g00819 416 PRINTS G protein beta WD-40 repeat signature 141 155 IPR020472 -
Car05g00819 416 PRINTS G protein beta WD-40 repeat signature 264 278 IPR020472 -
Car05g00819 416 PRINTS G protein beta WD-40 repeat signature 304 318 IPR020472 -
Car05g00819 416 PANTHER - 11 413 IPR044715 -
Car05g00819 416 SMART c3hfinal6 14 38 IPR000571 GO:0046872
Car05g00819 416 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Car05g00819 416 Pfam WD domain, G-beta repeat 118 154 IPR001680 GO:0005515
Car05g00819 416 Pfam WD domain, G-beta repeat 242 277 IPR001680 GO:0005515
Car05g00819 416 Pfam WD domain, G-beta repeat 282 316 IPR001680 GO:0005515
Car05g00819 416 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Car05g00819 416 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 11 413 - -
Car05g00819 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 122 154 - -
Car05g00819 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 287 316 - -
Car05g00819 416 ProSiteProfiles Zinc finger C3H1-type profile. 13 39 IPR000571 GO:0046872
Car05g00819 416 SUPERFAMILY WD40 repeat-like 116 408 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00819 Car-Chr5 44701979 44704654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00819 112 342 Eukaryotic Initiation Factors Gene Family AT2G46290 26.210 1.30e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car05g00819 WD40 0.00053 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00819 - - aprc:113849178 586.645