Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00815 ATGGCTTTTATTGAGAGAAACAACCTTGCAACCAAACCCAACATCTCCCGCAAGAGAAAGTTTGAAAACATTAAAGTGGAAGAAAAGTTTAACAAGGACCAACTTTCTTTCGCAAAACGTAAACAAGGGCTTTTCAATAAAGTCACTGAACTTTCCGTTCTATGCCAAGCCAAAACTGCGTTGATCATTACTTCAAAAGATAAAAAAATCTATGCATGTGGCTACCCTAACGTCGACACTGTGATCCGACACTTTCTTGACGGACAACAAAATCCCGTCGATGGTGAGAAACAGATGATGCAAGAAGAGGAAGAGAGCGTTGAAAATCTAAGGGTTCAGTATGAGGCACTTCAAGATCAACTCAAAGAAGAGAAGAAGAATTTGCAAGTTATAACTGAGGCACAAAAGAATGGTTCTTGTTTCCATTCTTGGTGGAATGATTCTATTGATGATATGAATTTGGAATCTCTTGAGATGTTTAAGACTTCTTTGGAAAATTTGAAGCTCAATTTACTTCTTTCTTTGGACGAAAAGAGAATCCGTTCGTCTTCTTCCACCATCAGGAATCAAATTATTGGATTATAA 585 0.3744 MAFIERNNLATKPNISRKRKFENIKVEEKFNKDQLSFAKRKQGLFNKVTELSVLCQAKTALIITSKDKKIYACGYPNVDTVIRHFLDGQQNPVDGEKQMMQEEEESVENLRVQYEALQDQLKEEKKNLQVITEAQKNGSCFHSWWNDSIDDMNLESLEMFKTSLENLKLNLLLSLDEKRIRSSSSTIRNQIIGL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00815 194 Coils Coil 93 134 - -
Car05g00815 194 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 72 IPR002100 GO:0003677|GO:0046983
Car05g00815 194 Gene3D - 31 111 IPR036879 GO:0003677|GO:0046983
Car05g00815 194 SUPERFAMILY SRF-like 19 87 IPR036879 GO:0003677|GO:0046983
Car05g00815 194 PANTHER MADS BOX PROTEIN 10 184 - -
Car05g00815 194 SMART madsneu2 16 76 IPR002100 GO:0003677|GO:0046983
Car05g00815 194 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Car05g00815 194 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Car05g00815 194 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Car05g00815 194 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 10 184 - -
Car05g00815 194 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00815 Car-Chr5 44664128 44664712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00815 18 168 Type I MADS-box Gene Family AT5G60440 33.117 5.69e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car05g00815 SRF-TF 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00815 - - cam:101507050 367.466