Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00808 ATGCAATCCCTCAAGTTACGTTCTCTTCTTTTTTATTCTCCTTTGAATTACTCACTTCATCCCTTTCTCTTTTCATTTTCTACTGCTTCTTTATCAACCCCAAATCAAACCACTATTCTCCACGATTTCCTCAATTCCAATTTCAATTTCCCCAAATCTCAATCCCTTTATATCTCTAAACGCATTTCATCTCACACCCTCCCTCTAAAGCCCTTATCCGTCCTCAACTTTTTCAAACAAATTGGATTCTCCGAATCTCAGATTCACTCTATCATTCGTCAGAGAGCTCAAATACTTTTCTCAGATGTTGATAAAACCCTAAAACCTAAAATTCACTTCTTTCAACAATTGGGTTTCCAATGTTCGGATTTATGCAATTTCATTTCCAAAAATCCCACCATTTTGACTGCTAGTTTGAACAAAACATTGGTACCCTCTGTCGAAGTCATTCGAAAAATTGTATGCAACGACAAAGATTTTATTTATGTTTTGTGCAAATGTGGTTGGATACTCCCAAAGTACCAACTTTTTGTCGCCAATGTCGCTTTCCTACAGAGATGGGGAATTTTTGGTGATCAGCTTTTGATTATACTCAAACGACAGTCGAGACTTTTGATTGCCACACAATGTACTATTAGGAACTATGTTTTGCAAGCTGTAGACTTGGGTTTCGAAGAAAATTCAAGAATGTTGGTTCACGCGCTTCATACCTTATCTGGTTTGAGTTCTAAAACATTTAGGAGAAAGATGGATTTCATTCAGGGTTTTGGGTTTTCTAAAGATGAGTGCATGCAAATGTTTAAAAAGACTCCGACTTTGCTTAGGACATCGGAGAAGAAATTAAAGGTTGGAATGGAATTCTTCTTGCAGACAGTAATGCTGCCAAAGTCAGTGTTGGTTCAACGGCCTGTGATTTTGATGTATAGCATTGAGGATCGAGTGTTTCCTCGGTATAGAGTTTTTCAGCTTTTGAAAGCACAAAATCTATGTAGGAAGGTTCCAAGCTTTATTCATGTGTTATGTTTGTCTGAAGACATGTTCTTGGACAAGTATATATCAAGGTTTAAAGAAAATGCAGAGCCATTGTTGATAGCGTACAAGGGGGAGCACTATCAAGAAGCATAA 1125 0.3733 MQSLKLRSLLFYSPLNYSLHPFLFSFSTASLSTPNQTTILHDFLNSNFNFPKSQSLYISKRISSHTLPLKPLSVLNFFKQIGFSESQIHSIIRQRAQILFSDVDKTLKPKIHFFQQLGFQCSDLCNFISKNPTILTASLNKTLVPSVEVIRKIVCNDKDFIYVLCKCGWILPKYQLFVANVAFLQRWGIFGDQLLIILKRQSRLLIATQCTIRNYVLQAVDLGFEENSRMLVHALHTLSGLSSKTFRRKMDFIQGFGFSKDECMQMFKKTPTLLRTSEKKLKVGMEFFLQTVMLPKSVLVQRPVILMYSIEDRVFPRYRVFQLLKAQNLCRKVPSFIHVLCLSEDMFLDKYISRFKENAEPLLIAYKGEHYQEA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00808 374 Pfam mTERF 176 347 IPR003690 GO:0003690|GO:0006355
Car05g00808 374 Pfam mTERF 75 167 IPR003690 GO:0003690|GO:0006355
Car05g00808 374 PANTHER CGI-12 PROTEIN-RELATED 28 368 IPR003690 GO:0003690|GO:0006355
Car05g00808 374 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Car05g00808 374 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Car05g00808 374 SMART mt_12 229 259 IPR003690 GO:0003690|GO:0006355
Car05g00808 374 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
Car05g00808 374 SMART mt_12 296 327 IPR003690 GO:0003690|GO:0006355
Car05g00808 374 PANTHER EMB|CAB62602.1 28 368 - -
Car05g00808 374 Gene3D Transcription termination factor 3, mitochondrial 172 358 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00808 Car-Chr5 44498812 44499936 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Car05g00808 mTERF 2.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00808 K15032 - csin:114301363 330.487