Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00774 ATGGCTAGAAAGAAGGTGAAACTTGCATACATATCTTGTCACTCGAAGAGGAGGGAAACATTCAAAAAAAGGAAAAACGGTATACTTAAGAAGGTTAATGAAATCAGCACCCTTTGTGGAATAGAAGCATGTGCAATAATTTATGATAAAAATAATACTCAAGTAGATGTTTGGCCTTCAGAGTCAGGAGTTAAAAGTGTATTGTCAAGATTTATGAGTTTTCCTGAAATGGAACGGAGTAAAAAGATGGTGGATCAAGAGGGTTTCTTGAGGCAAAGCATAGAGAAAGTCTATGAGCAGCTGAAGAAACATATGGAGGAAAGTAGGAAGAAGGAAATGACAAATCTTGTTGGTCAATACATTCATACAGGAGAATTTAATGGCTATTTAATGAGTAAGAATGATCTTAATGATTTCTCGTCTTTTATCGATGAGAGTTTGAAGAATGTCGAACAAAAACTAACACAAATATCAATCGAAGGCAAAGAGGAAGTTGGAAATGGAGCTGAATCAATAAAAATAGAGGGACAGGAAAACATGAGCGATGCCACAATAAGGTTTCTTAGTGGAGGAGATCATCAACAAGCAAATATGGATTATGTAGTCCAAGGACAAGAGACCAACATAGGTGAAGCTATGCAAATTAATTATCCGCAATGGCCTATGGATTTCCCCATGCTGCCATATTTTTATGATAATCTTGATCAAAATGGTTTTTAG 720 0.3583 MARKKVKLAYISCHSKRRETFKKRKNGILKKVNEISTLCGIEACAIIYDKNNTQVDVWPSESGVKSVLSRFMSFPEMERSKKMVDQEGFLRQSIEKVYEQLKKHMEESRKKEMTNLVGQYIHTGEFNGYLMSKNDLNDFSSFIDESLKNVEQKLTQISIEGKEEVGNGAESIKIEGQENMSDATIRFLSGGDHQQANMDYVVQGQETNIGEAMQINYPQWPMDFPMLPYFYDNLDQNGF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00774 239 Coils Coil 91 111 - -
Car05g00774 239 PANTHER MADS BOX PROTEIN 2 170 - -
Car05g00774 239 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car05g00774 239 Gene3D - 14 91 IPR036879 GO:0003677|GO:0046983
Car05g00774 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Car05g00774 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car05g00774 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car05g00774 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car05g00774 239 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Car05g00774 239 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 170 - -
Car05g00774 239 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Car05g00774 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00774 Car-Chr5 43022768 43023996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00774 1 178 Type I MADS-box Gene Family AT5G48670 47.753 2.44e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car05g00774 SRF-TF 2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00774 - - cam:101496969 391.734