Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00767 ATGAATTCTGAAGGAGAAAACCATGTAACTAAGGATCATAATGATATTTCTTGCAGAAGAGCAGTTTCTCTTCCTGTTGCTTTCAAGGATGATGATCTTCTCCTAGAAATACCGTCAAGAACACCAGAAGAGTGTTCGCAAGATTTTGTTGCAATCAAAATGCCAATGACACCAAGTCCAACTCCTACTCCCAAAAGAGTGAATTTTCTGGTGAGTTCTCGCAGTGTTGGCGCTCTGATAAATAATTCACCTGGATCTGAAACATCGAAAGGCAAATCATCGATAAGAAACTTCCTACCAAAATTGAGCTTCATGTATAGGACACCAGCAAATATTGAAAAGGCTAATACACCAACTCCAGAAGTTTTGTCTTCGGGTTCTCGAGAAAAGCCTTTAATCTCAAGATCATTGTCCCTTAGTAAGACATTTTCTCCTCGGATTAAAAGAACTTCATCATTGCCGGTAGAAGATATTGGAATTTCAAACACAGAATCTACTCATGGTGGAAATGGAAGTGTTGGTGGTCCTCCTCTGAGTAAAAAACAGACTCGGCGAAAGATAGCTCGCTCTCTTTCAATGCCTACCAACAACAAGGACAAAAGCCTGAGGAGGATGGATTCGTTTTTTCGTGTTGTTCCTTCTACTTCTCGAGTAAAGGAAATAAATGAATTGTTGAGCGTGTCCTCAACAAAAGATACTGAAAACGAAGATGCTGATGATGGTGGTGAAGATATAGCTAAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGAATTATGTGAAGGAGGTGAGACCTTCAAGTTGGAATGTAGCTGCAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACTTGTGATGTTTGCAAGGAGGATGTTAAAAACCTTCCTGTCACTATATTACGGATCCAAAGTGTTCGAAATCAGATTAGTGGAGCAAGTAGATCTCCGCTCGAAGATGTAAACGGGTCCAGGGTTTGGATGGAAGTTCCGATGCTTGTCATTGTCAGCATATTGGGCTATTTTTTTTTCCTTGAGCAACTGTTGTTTGCAAAAATGGGAACTGGTGCAATTGCCACAGCTCTTCCATTTTCCTGTGTACTTGGTCTGCTCTCCTCCATGACATCGTCAACCATGGTGCAGAGCAGGTTCATATGGATTTATGCATCTTTCCAGTTTGCTATGGTGGTTCTATTCGCGCATATATTTTACTCTTTGGTTCATCTGCAAGCAGTTCTGTCAGTCCTTCTTGCAACCTTTGCTGGTTTTGGTGTGGTGATGAGTGGAAGTTATATCCCTGTAGAGTTTTTTAGATGGAGAAGGAGATGGCAGGCTCTACAAGAGCAACAACATGGCGCTCAACTGATGACACAAGCAGGACAACAACCTCAAGCTGTAAACACCCCACGCTTGGACGCATCCAACGACAGTCATCCGGTTGTGCAAGATCTACAAAACTCAAATCAGAGCTGA 1503 0.4178 MNSEGENHVTKDHNDISCRRAVSLPVAFKDDDLLLEIPSRTPEECSQDFVAIKMPMTPSPTPTPKRVNFLVSSRSVGALINNSPGSETSKGKSSIRNFLPKLSFMYRTPANIEKANTPTPEVLSSGSREKPLISRSLSLSKTFSPRIKRTSSLPVEDIGISNTESTHGGNGSVGGPPLSKKQTRRKIARSLSMPTNNKDKSLRRMDSFFRVVPSTSRVKEINELLSVSSTKDTENEDADDGGEDIAKEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEDVKNLPVTILRIQSVRNQISGASRSPLEDVNGSRVWMEVPMLVIVSILGYFFFLEQLLFAKMGTGAIATALPFSCVLGLLSSMTSSTMVQSRFIWIYASFQFAMVVLFAHIFYSLVHLQAVLSVLLATFAGFGVVMSGSYIPVEFFRWRRRWQALQEQQHGAQLMTQAGQQPQAVNTPRLDASNDSHPVVQDLQNSNQS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00767 500 Pfam RING-variant domain 252 299 IPR011016 GO:0008270
Car05g00767 500 SUPERFAMILY RING/U-box 248 302 - -
Car05g00767 500 CDD RING_CH-C4HC3_MARCH 252 300 - -
Car05g00767 500 MobiDBLite consensus disorder prediction 477 500 - -
Car05g00767 500 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 19 474 - -
Car05g00767 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 308 IPR013083 -
Car05g00767 500 PANTHER OS02G0165000 PROTEIN 19 474 - -
Car05g00767 500 SMART ringv_2 251 300 IPR011016 GO:0008270
Car05g00767 500 ProSiteProfiles Zinc finger RING-CH-type profile. 244 306 IPR011016 GO:0008270
Car05g00767 500 MobiDBLite consensus disorder prediction 154 199 - -
Car05g00767 500 MobiDBLite consensus disorder prediction 154 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00767 Car-Chr5 42892003 42895880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00767 249 306 C3H Transcription Factor Family AT2G37950 47.458 1.79e-12 64.7