Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00762 ATGGATGTTAACTCTTCTTCCATAAGGTATCAACTCTTCTTCCATAAGAACATCTTGATCAGACCAACCCCATTTCTTAAAGGTGTACGATGGCCTGGGAATTTGGACAGAGATCCAAAGGGCTGGAACATGCCTCCTAAACAAAACCAATTGAAAATTGCAATCAGAAGCAGAACCTCATTTTCCAAGTTTGTCAAGTTGAATTTTTATCCTCCTGTGAATGAGATCATTGAACAATGTGGAAAATTCCATTTGCTCAACCGATTGTTGGAACGGCTATTTGCACGAAATCACAAAGTTCTGATCTTCAGTCAGTGGACTAGAGTGTTGGATATAATGGATTATTATTTCAGTGAAAAAGGCTTCGAAGTTTGCAGGATTGATGGTTCAGTGAAACTGGAGGATAGGAAACGGCAGAACCAGGACTTCAATGATACAAACAGCAATTGCCGAATCTTCCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGATTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATCGGTCAAACAAAGCATGTTCATGTTTACAGGCTCGCAACTGCTCAATCAGTAGAGGGTCGAATGTTAAAAAGAGCTTTCAACAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAAGGACAGTTTCATCAAGAGCGTACAAAGCCTGCCATTGTGGATGAGATGGAGATCCAGGACTTCAATGATACAAACAACAATTGCCGAATCTTCCTTCTTTCTACTAGGGCTGGTGGATCGGGAATTAACCTCACTGCAGCTAACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATCGGTCAAACAAAGCCTGTTCATGTTTACAGGCTCGCAACTGCTCAATCAGTAGAGGGTCAAATGTTAAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAAAGACAGTTTCATCAAGAGCGTACGAAGCCTGCCATTGTGGATGAGATGGAGGTTTGTGTCATAGGCTTGGCTGAAATTTTTAGGCTTGGCTCATTTAAAGATGAAGCAAAAGAGATTGTTGAGATGTCAACAGTGGAAGCCTATCGCATGGCTATGGAAAGTGTGGTTAGATGA 1200 0.415 MDVNSSSIRYQLFFHKNILIRPTPFLKGVRWPGNLDRDPKGWNMPPKQNQLKIAIRSRTSFSKFVKLNFYPPVNEIIEQCGKFHLLNRLLERLFARNHKVLIFSQWTRVLDIMDYYFSEKGFEVCRIDGSVKLEDRKRQNQDFNDTNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKHVHVYRLATAQSVEGRMLKRAFNKLKLEHVVIEKGQFHQERTKPAIVDEMEIQDFNDTNNNCRIFLLSTRAGGSGINLTAANTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGQMLKRAFSKLKLEHVVIEKRQFHQERTKPAIVDEMEVCVIGLAEIFRLGSFKDEAKEIVEMSTVEAYRMAMESVVR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00762 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 240 IPR027417 -
Car05g00762 399 Pfam Helicase conserved C-terminal domain 248 305 IPR001650 -
Car05g00762 399 Pfam Helicase conserved C-terminal domain 86 195 IPR001650 -
Car05g00762 399 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 85 241 IPR001650 -
Car05g00762 399 PANTHER BNAC07G16550D PROTEIN 249 354 - -
Car05g00762 399 PANTHER BNAC07G16550D PROTEIN 68 243 - -
Car05g00762 399 SMART helicmild6 214 305 IPR001650 -
Car05g00762 399 SMART helicmild6 111 195 IPR001650 -
Car05g00762 399 PANTHER SNF2/RAD54 HELICASE FAMILY 249 354 - -
Car05g00762 399 PANTHER SNF2/RAD54 HELICASE FAMILY 68 243 - -
Car05g00762 399 CDD SF2_C_SNF 71 205 - -
Car05g00762 399 CDD SF2_C 263 308 - -
Car05g00762 399 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 250 351 IPR001650 -
Car05g00762 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 349 IPR027417 -
Car05g00762 399 Gene3D - 49 247 IPR027417 -
Car05g00762 399 Gene3D - 248 395 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00762 Car-Chr5 42723292 42727118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00762 185 325 RAD5 or RAD16-like Gene Family AT5G43530 31.469 1.23e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00762 K19001 - gmx:100777687 339.347