Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00758 ATGATGTCAAGGGGAGCAACATACTGGTGTCATACATGCAGGCAGCCAATCTTGCTTGCAGGGAGGGATGTCCTTTGCCCGTACTGCGACGGAGGATTTGTGCAAGAAGTTAACGAGATGCGAGGACTAGcatcatcatcatcatcatcaCAGTCAGAAGAGTTTCAAGACGATCCTGATATTTTCGATGCAATACATGCTGTTGTAAGTCAAAGAGGTTCTGTACCAAGAATTGGGTTTAGAGATGCTGTTGATAGTTACATGAGGCAAAGAATGGATGGAAGATCTGGTTCTGGTTCTGTTTCTGTTCCTGAACAGACTTGGGGTGTTTTTAGTTCTTCCGGCCGATATTTAATAGTCCATGGCCAAACACCTAACTCAAGAGGCGATCCTCGGCGCGTTGATTTTGGTGGCTACTTTATGGATCGTGGACTAGATGAACTTATCGAACAACTGAATACGAATGGTCGTGGTCCAGCACCTGCCTCGCGATCTTCGATTGAAGCAATGCCTACCATTAAGATCACAAAAGAACATCTTCAGTCTGATTCACTCTGTCCAGTTTGTATAGAAAGGTTTGAACTAGGTTGTAAGGCAAGGGAAATGCCTTGTAACCATATTTACCACTCGGATTGCATTGTTCCTTGGTTAATTCAGCATAATTCATGTCCTGTTTGCCGTATTGAGTTGCCACCTCATGGACGTACTAGTTCTCGTGCCAGTGGCCGTGGAAGGCGAAATCCGCTGTCATTTTTGTGGCCATTTCGTTCGTCCAGTTCAAATACTAATCGTTGA 795 0.4377 MMSRGATYWCHTCRQPILLAGRDVLCPYCDGGFVQEVNEMRGLASSSSSSQSEEFQDDPDIFDAIHAVVSQRGSVPRIGFRDAVDSYMRQRMDGRSGSGSVSVPEQTWGVFSSSGRYLIVHGQTPNSRGDPRRVDFGGYFMDRGLDELIEQLNTNGRGPAPASRSSIEAMPTIKITKEHLQSDSLCPVCIERFELGCKAREMPCNHIYHSDCIVPWLIQHNSCPVCRIELPPHGRTSSRASGRGRRNPLSFLWPFRSSSSNTNR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00758 264 SUPERFAMILY RING/U-box 166 233 - -
Car05g00758 264 SMART ring_2 186 226 IPR001841 -
Car05g00758 264 Pfam Ring finger domain 186 227 IPR001841 -
Car05g00758 264 Pfam zinc-ribbon 7 36 IPR039525 GO:0061630
Car05g00758 264 CDD RING-H2_RNF126_like 186 227 - -
Car05g00758 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 239 263 - -
Car05g00758 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 236 - -
Car05g00758 264 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Car05g00758 264 PANTHER OS03G0351800 PROTEIN 2 236 - -
Car05g00758 264 PANTHER OS03G0351800 PROTEIN 239 263 - -
Car05g00758 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 233 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00758 Car-Chr5 42563086 42563880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00758 131 249 C3H Transcription Factor Family AT5G01980 41.803 2.06e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00758 K11982 - cam:101496968 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00758 05 42563086 42563880 Car05g00758 05 42563086 42563880 ECH