Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00750 ATGTCTAGTAGAAGGTCACGGTCAAGGCAAACAAGTAGTAGTTCAAGGAATATCACCGACGATCAGATCCATGATCTTGTCTCCAAGTTGCAACAACTTCTTCCTGAGATTCGCAATAGGAGCTCCGACAAGGTTTCAGCTTCCAGGGTGTTGCAGGAGACTTGCAACTATATTAGAAGCTTGCACAGGGAAGTTGACGATTTAAGTGAACGTTTGTCTGAGCTATTGGCTACAACAGATTCAGCACAAGCTGCAATAATTAGAAATTTACTTATGCAATAG 282 0.422 MSSRRSRSRQTSSSSRNITDDQIHDLVSKLQQLLPEIRNRSSDKVSASRVLQETCNYIRSLHREVDDLSERLSELLATTDSAQAAIIRNLLMQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00750 93 CDD bHLH_AtPRE_like 18 78 - -
Car05g00750 93 MobiDBLite consensus disorder prediction 1 21 - -
Car05g00750 93 Coils Coil 58 78 - -
Car05g00750 93 Pfam Helix-loop-helix DNA-binding domain 21 62 IPR011598 GO:0046983
Car05g00750 93 PANTHER TRANSCRIPTION FACTOR PRE3 1 92 - -
Car05g00750 93 Gene3D - 19 89 IPR036638 GO:0046983
Car05g00750 93 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Car05g00750 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 61 IPR011598 GO:0046983
Car05g00750 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 79 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00750 Car-Chr5 42331293 42334258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00750 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 72.340 5.11e-39 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car05g00750 HLH 4.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00750 - - gmx:100527636 148.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00723 02 9656728 9657895 Car05g00750 05 42331293 42334258 ECH
Car07g02099 07 26182481 26184197 Car05g00750 05 42331293 42334258 ECH
Car05g00750 05 42331293 42334258 Car05g00750 05 42331293 42334258 ECH