Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00740 ATGAAGAGATCACCTTGTTGTGATAAAATAAGGATTAAGAAAGGGCCTTGGACTCCAGAGGAGGATATAATTTTGGTGTCTTATATTCAAGAACATGGACCTGGGAATTGGAGCTCAGTTACCTCCAATACAGGTTTGATGAGATGCAGCAAAAGTTGCAGACTTAGATGGACCAATTATCTCCGGCCAGGTATCAAACGAGGTAGCTTCACTGATCATGAAGAAAAAATGATAATCAACCTTCAACAACTTTTGGGAAATAGATGGGCTGCCATAGCTTCTTATCTTCCACAGAGGACAGACAATGACATAAAAAACTATTGGAACACACATTTGAAGAAAAAGCTAAAGAAGATTCAAACAAGTAGTAACAATGAAAAAGAAGGAATCACTATTCCAATTGTAAAAGGTCAGTGGGAGAGAAGGCTTCAAACAGATATTCATATGGCAAAACAAGCTTTGTGTGAGGCACTTTCCATTGACAAGTCAACAAATATTATTTTACCTGAAAAAAACAACATCATGAGTTACAATAACTATGCAACCAACCCCACAACATTAAACCAAACATCCTCTTATGCATCAAACACTGAAAACATAGCTAGATTGCTAGAAAAGTGGATGAAAAAACCACAAAATTCAGCTTATACAATAAATTCAGGAAATTCCTTTAGCAATATGGTCACAACAACAGGATCCAGTTCTAGTGAATGCACACAAAAAGATTATGCTTTTGGTTCTATGTTGAGCTTTAAGCACTCCTATAATTCTGATTGTTCACAATCTTTGTCAGTTGATGAAAACAACAACTTGACAATGGATTATTGCCTTTTTCAAGATGAAAGTAAGCCAAAACAGGTAACTCAAGCCCCCCTCACTTTTTTGGAAAAGTGGCTTTTTGATGATGGGGCTGTTCAGTGCAATGAAGATCTAATGAACATGTCATTGGAGGAAAATACATCAGGGTTGTTTTAG 975 0.3651 MKRSPCCDKIRIKKGPWTPEEDIILVSYIQEHGPGNWSSVTSNTGLMRCSKSCRLRWTNYLRPGIKRGSFTDHEEKMIINLQQLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKIQTSSNNEKEGITIPIVKGQWERRLQTDIHMAKQALCEALSIDKSTNIILPEKNNIMSYNNYATNPTTLNQTSSYASNTENIARLLEKWMKKPQNSAYTINSGNSFSNMVTTTGSSSSECTQKDYAFGSMLSFKHSYNSDCSQSLSVDENNNLTMDYCLFQDESKPKQVTQAPLTFLEKWLFDDGAVQCNEDLMNMSLEENTSGLF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00740 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car05g00740 324 CDD SANT 69 112 IPR001005 -
Car05g00740 324 Gene3D - 69 131 - -
Car05g00740 324 CDD SANT 16 61 IPR001005 -
Car05g00740 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 309 - -
Car05g00740 324 Gene3D - 13 66 - -
Car05g00740 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car05g00740 324 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Car05g00740 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car05g00740 324 SMART sant 66 114 IPR001005 -
Car05g00740 324 SMART sant 13 63 IPR001005 -
Car05g00740 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Car05g00740 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Car05g00740 324 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 309 - -
Car05g00740 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00740 Car-Chr5 42013286 42015363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00740 1 324 MYB Transcription Factor Family AT5G62470 47.978 1.05e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g00740 Myb_DNA-binding 7.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00740 K09422 - pvy:116114586 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00740 05 42013286 42015363 Car05g00740 05 42013286 42015363 ECH